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Tag: University of Helsinki

  • An Unusual Theory Suggests That Sex Helps the Body Tolerate a Fetus

    An Unusual Theory Suggests That Sex Helps the Body Tolerate a Fetus

    In the early 1990s, while studying preeclampsia in Guadeloupe, Pierre-Yves Robillard hit upon a realization that seemed to shake the foundations of his field. Preeclampsia, a pregnancy complication that causes some 500,000 fetal deaths and 70,000 maternal deaths around the world each year, had for decades been regarded as a condition most common among new mothers, whose bodies were mounting an inappropriate attack on a first baby. But Robillard, now a neonatologist and epidemiologist at Centre Hospitalier Universitaire de La Réunion, on Réunion Island in the Indian Ocean, kept seeing the condition crop up during second, third, or fourth pregnancies—a pattern that a few other studies had documented, but had yet to fully explain. Then, Robillard noticed something else. “These women had changed the father,” he told me. The catalyst in these cases of preeclampsia, he eventually surmised, wasn’t the newness of pregnancy. It was the newness of paternal genetic material that, maybe, the mother hadn’t had enough exposure to before.

    Robillard’s idea was unconventional not only because it challenged the dogma of the time, but because it implied certain evolutionary consequences. Preeclampsia appears to be exclusive (or almost exclusive) to humans, and may have arisen as a by-product of the particularly aggressive ways in which our fetuses pillage their mother’s body for resources. So, Robillard and his colleagues posited, maybe the dangers it poses then pressured humans into developing a bizarre trait: being rather inefficient at conceiving offspring. Maybe, if humans aren’t terribly fertile, they need to have a lot of sex; maybe having a lot of sex repeatedly exposes a mother to her partner’s semen, inuring her to the molecular makeup of future offspring. If preeclampsia is a kind of immune overreaction, then perhaps unprotected sex is the world’s most unconventional allergy shot.

    That, at least, is what Robillard and his colleagues contend—a notion that’s “a bit controversial, and a bit awkward,” Inkeri Lokki, an immunologist and reproductive biologist at the University of Helsinki, told me. She remembers a senior researcher in the field once framing the upshot of the hypothesis as “pick your partner early, and practice.”

    Foreign genetic material aside, a mother’s body has every reason to be wary of a fetus. Pregnancy is an intergenerational struggle in which the fetus tries to pillage all the nutrients it can from the mother’s tissues, while the mother tries to keep some of her own resources in reserve.

    For most mammals, the two parties easily reach a lasting stalemate. Among humans, though, the fetus starts “with the upper hand,” Amy Boddy, an evolutionary biologist at UC Santa Barbara, told me. Whether it’s because of the extreme nutritional demands of our energy-guzzling brain, or just a constraint of how the primate lineage evolved, no other developing mammal invades quite as vigorously as the human embryo does: Through two waves of invasion, our placental cells burrow so deeply into the lining of the uterus that they breach its muscular layer, where they unfurl, melt, and rewire an entire set of blood vessels until they widen and relax. In the process, tissues liquify, and cells are forced apart, all to get an enormous amount of “blood delivered to the placenta,” Julienne Rutherford, a biological anthropologist at the University of Arizona College of Nursing, told me.

    The fetus thrives in these conditions—but it also asks so much of the mother’s body that it almost invites pushback. Preeclampsia, then, at least when it appears prior to 34 weeks of gestation, is arguably a manifestation of a human mother’s defenses wising up to the invasion, then kicking into overdrive. When researchers examine tissue samples in early-onset preeclampsia cases, they tend to find that the placenta has been prevented from invading the uterus thoroughly enough, Haley Ragsdale, a biological anthropologist at Northwestern University, told me. Now at risk of starving, the fetus tries to juice more from mom—in part by raising maternal blood pressure, preeclampsia’s hallmark symptom. (High blood pressure that arises in the last few weeks of pregnancy can signal late-onset preeclampsia, but researchers generally think the causes are distinct.)

    Why exactly the placenta’s invasion flags in early-onset cases remains contentious, Offer Erez, an ob-gyn at Soroka University Medical Center, in Israel, told me. One possibility, as Robillard and others argue, is that a mother’s immune system, unaccustomed to her partner’s particular blend of molecules, codes the fetus as foreign, and dispatches a fleet of defenses to waylay the threat. If that’s indeed the case, a logical workaround might involve familiarizing her body with those foreign substances—and nipping her overreaction in the bud.

    Semen could do the trick: It’s chock-full of paternal material, and introduced into the vaginal tract, where a legion of immune cells and molecules roam. It also contains signaling molecules that might be able to mollify the maternal immune system. Repeat exposures with no harm send a clear message: I am safe, says Gustaaf Dekker, who leads the department of obstetrics and gynecology at Northern Adelaide Local Health Network, in Australia, and who has collaborated for years with Robillard.

    In the past three decades, Dekker, Robillard, and their colleagues have amassed a large amount of evidence to support that idea. Across several populations, the risk of early-onset preeclampsia seems to be higher among couples conceiving for the first time; it’s also higher among people using donor sperm and eggs. The risk also seems lower among couples who have a lot of penetrative or oral sex before they get pregnant—at least, if they skip the condoms, some studies suggest. There’s even evidence that repeat exposures to seminal fluid can make female mice more tolerant of cells sampled from their mates.

    From an evolutionary perspective, the theory goes even further. If it is important to indoctrinate the maternal immune system with semen, “that is a strong selective pressure” for humans to adopt a suite of behaviors to facilitate that exposure, says Bernard Crespi, an evolutionary biologist at Simon Fraser University, in Canada, who’s collaborated with Robillard. Our bodies’ combative approach to placentation could help to explain our semi-monogamous nature, our comparably low fertility among mammals, and our comparatively large testes, which can provide a generous supply of sperm. It may even have influenced the unusual ways in which the female human body conceals its own fertility. Unlike other mammals, we don’t regularly enter an obvious period of heat, or visibly signal when we ovulate—both traits that encourage more frequent sex in pursuit of reproduction. If repeat couplings are just kind of our thing, maybe it’s because they make our pregnancies that much safer.

    The paternal-immunity hypothesis is not the only possible explanation for early-onset preeclampsia, and for some researchers, it is far from the strongest one. Fathers could be playing a different role in the condition. Some evidence suggests that certain males pass down DNA that predisposes their offspring to implant a bit differently in the womb, Laura Schulz, a women’s-health researcher at the University of Missouri School of Medicine, pointed out to me. And Carlos Galaviz Hernández, a geneticist at CIIDIR Unidad Durango, in Mexico, told me that immune compatibility may matter, too: The mother might be able to better tolerate some partners, analogous to the way that organ transplants are more successful if certain molecular signatures match. In some cases, the mother’s DNA may be the dominant force. Certain women, for instance, seem genetically predisposed to developing the condition, regardless of whom they partner with.

    Jimmy Espinoza, a maternal-fetal-medicine specialist at UTHealth Houston’s McGovern Medical School, also pointed out to me that the idea Robillard has championed has its own scientific issues. In recent years, especially, other teams of researchers have found evidence that seems to directly contradict it—in some cases, finding that some people may reduce their chances of preeclampsia if they switch to a different partner for a subsequent child. (Dekker and Robillard argue that several of these studies had issues, including possible misdiagnoses and not distinguishing enough between early- and late-onset preeclampsia.)

    All of these ideas may have some truth to them—in part because preeclampsia, like cancer, is a catchall term for different disease pathways that manifest similarly at their tail end, Andrea Edlow, a maternal-fetal-medicine specialist at Massachusetts General Hospital, told me. And despite evidence to the contrary, “I still support the hypothesis,” Dekker told me. In his opinion, “nobody has come up with a better one.”

    Even if the semen hypothesis turns out to be correct, it’s hard to know what to do with that information. Breakthroughs are desperately needed: Although preeclampsia has been documented for millennia, diagnostics, treatments, and preventives are scant. Maybe better understanding paternal exposures will someday lead to preconception vaccines, or targeted immunotherapies for people deemed high risk. Today, though, the idea’s most actionable takeaways are very limited. In Robillard’s ideal world, clinicians would recommend at least six months of sexually active cohabitation, or at least 100 sexual encounters, before conception; pregnant people would also routinely disclose their sexual history with their partner to their doctor, and changes in partners would be noted in medical charts. Unsurprisingly, “it’s been an uphill battle” to sell some of those ideas to colleagues, Dekker told me.

    Edlow, for one, generally supports the idea of paternal tolerance. But “it’s not something I would talk to patients about,” she told me. Sarah Kilpatrick, the chair of the department of obstetrics and gynecology at Cedars-Sinai, in Los Angeles, feels similarly. There’s just not quite enough evidence to build a recommendation, she told me—and designing a large clinical trial to rigorously test these ideas is difficult, especially for a condition with such serious risks.

    Plus, a pre-pregnancy injunction to have more sex to lower the risk of preeclampsia can only really apply to a very specific audience. It assumes heterosexuality; it implies monogamy. Even the amount of sex that Robillard advocates for could pose a challenge for some couples who meet those criteria. And heterosexual, monogamous couples hardly represent the full universe of people who are getting pregnant—among them people who are pursuing single parenthood, who get pregnant through intrauterine insemination or in vitro fertilization, who are seeking donor sperm or embryos, and who get pregnant quickly or perhaps unintentionally. And although the chances of preeclampsia may be slightly elevated in some of those cohorts, in the broadest terms, “why person X gets it, and why person Y doesn’t get it, we just don’t know,” Kilpatrick told me. Plus, a clinical strategy that pushes for, or even seems to justify, long-term sexual monogamy puts medical professionals in the position of actively prescribing a very specific and limited vision of human sexuality, Rutherford, the biological anthropologist, told me.

    Frankly, Edlow told me, “I don’t want to take this condition that affects pregnancy and make it all about men’s sperm.” There may yet be other ways to trigger tolerance, or keep the maternal immune system in check. Preeclampsia, for whatever reason, may be an evolutionary snarl our lineage got tangled up in. But to address it, or even solve it, people may not need to bend to evolution’s whims.

    Katherine J. Wu

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  • Promoting Legume Consumption and Reducing Red Meat Safely Supports Bone Health and Protein Intake

    Promoting Legume Consumption and Reducing Red Meat Safely Supports Bone Health and Protein Intake

    Newswise — A study conducted at the University of Helsinki demonstrated that the partial substitution of red and processed meat with pea- and faba bean–based food products ensured sufficient intake of amino acids in the diet and did not negatively affect bone metabolism.

    “Decreasing the consumption of red and processed meat in the diet to the upper limit of the Planetary Health Diet while increasing the consumption of legumes cultivated in Finland, such as peas and faba beans, is safe from the perspective of protein nutrition. Similarly, bone health is not compromised by such a dietary change either,” says Docent Suvi Itkonen from the Faculty of Agriculture and Forestry.

    In the BeanMan study, 102 Finnish men followed a study diet for six weeks.

    • One group consumed 760 grams of red and processed meat per week, which accounted for 25% of the total protein intake. The amount corresponds to the average protein consumption of Finnish men.
    • The other group consumed food products based on legumes, mainly peas and faba beans, corresponding to 20% of the total protein intake. In addition, the amount of red and processed meat consumed per week in this group amounted to the upper limit of the Planetary Health Diet (200 g or 5% of the total protein intake).

    Otherwise, the study subjects followed their habitual diet but were not allowed to eat other red or processed meat or legumes than those provided by the study.

    The researchers did not find any differences between the dietary groups in markers of bone formation or resorption. Neither did the intake of calcium or vitamin D differ between the groups. Calcium intake was in line with the current dietary recommendations, and the intake of vitamin D was very close to the recommendations. Mean essential amino acid and protein intakes met the recommendations in both groups.

    “Reducing read meat consumption is extremely important in terms of environmental impact,” Itkonen notes.

    Increasingly plant-based diets are becoming more and more popular, and the recently updated Nordic Nutrition Recommendations also emphasise the restriction of meat consumption and the moderation of dairy consumption.

    “In this study, the subjects consumed dairy products as in their habitual diets, thus their calcium and vitamin D intakes were unchanged. However, in terms of bone health, it is important to bear in mind that if one reduces the amount of dairy in the diet, it is necessary to ensure the intake of calcium and vitamin D from other sources. These sources can be plant-based beverages and yoghurt-like products fortified with those nutrients or, when necessary, dietary supplements,” Itkonen points out.

    Other findings in the BeanMan study related to, among others, lipid metabolism, gut health and nutrient intakes will be published later.

    Leg4Life (Legumes for Sustainable Food System and Healthy Life – Palkokasveilla kohti kestävää ruokajärjestelmää ja terveyttä) is a multidisciplinary project funded by the Strategic Research Council of the Academy of Finland. Leg4Life aims to achieve a comprehensive societal change towards a healthier food system and climate neutral food production and consumption by increasing the use of legumes. There are five extensive work packages in the project that cover the whole food chain from field to dinner table, all researching legumes that thrive in Finnish boreal conditions.

    University of Helsinki

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  • Finnish study shows those at risk were less likely to get vaccinated.

    Finnish study shows those at risk were less likely to get vaccinated.

    Newswise — A large-scale registry study in Finland has identified several factors associated with uptake of the first dose of COVID-19 vaccination. In particular, persons with low or no labor income and persons with mental health or substance abuse issues were less likely to vaccinate.

    The study, carried out in collaboration between the University of Helsinki and the Finnish Institute of Health and Welfare, tested the association of nearly 3000 health, demographic and socio-economic variables with the uptake of the first COVID-19 vaccination dose across the entire Finnish population. 

    This work, just published in the Nature Human Behavior, is the largest study to date on this topic. 

    The single most significant factors that associated with reduced likelihood of being vaccinated were lack of labor income in the year preceding the pandemic, mother tongue other than Finnish or Swedish and having unvaccinated close relatives, especially the mother. Among health-related variables, factors related to mental health and substance abuse problems associated with reduced vaccination.

    “Lack of labor income can be due to unemployment, sickness or retirement. Furthermore, among individuals with labor income, we saw that low-income earners where the least likely to vaccinate”, explains Tuomo Hartonen, Postdoctoral Researcher at the Institute for Molecular Medicine Finland FIMM, University of Helsinki.

    The study was based on the FinRegistry data. Researchers analysed population-wide national health and population register data from the pre-pandemic period and compared these with the vaccination status data. The analyses were limited to people aged 30-80 years.

    “A particular strength of our study is that it is based on registers covering the entire Finnish population. This way we can avoid all selection bias, which is a major challenge of survey studies”, Postdoctoral Researcher Bradley Jermy from FIMM says.

    The researchers stress that their results describe the association between the studied variables and vaccination uptake at the population level, but do not allow conclusions to be drawn about causal relationships. Furthermore, the generalizability of the findings outside Finland requires further studies. However, it is clear from the results that in Finland, vaccination uptake was lowest among those who are already in a vulnerable position.

    Researchers created a machine learning-based model to predict vaccination uptake

    In addition to studying single predictors, the research team constructed a machine learning-based model to predict vaccination uptake. This prediction model allowed the researchers to group individuals according to their likelihood of receiving the COVID-19 vaccine.

    Approximately 90% of the total study population received at least one dose of COVID-19 vaccination. In contrast, the group with the lowest probability of being vaccinated based on the model had a vaccination rate of less than 19%.

    “Our research has created a framework for using machine learning and statistical approaches to identify those groups that are at higher risk of not vaccinating”, says the corresponding author of the study, Associate Professor Andrea Ganna from FIMM.

     “These results and the predictive model could be used in the future, for example in designing vaccination campaigns”, says the Principal Investigator of the FinRegistry study, Research Professor Markus Perola from THL.

    “This study is a great example of the possibilities that the FinRegistry study creates for investigating highly topical issues in a short timeframe. The collaboration between THL’s genetic and registry researchers and FIMM scientists will help to understand the many pathways that lead to susceptibility to different diseases,” Perola continues.

    The study is part of the FinRegistry project, a joint research project between the Finnish Institute for Health and Welfare (THL) and the Institute for Molecular Medicine Finland (FIMM) at the University of Helsinki.

    University of Helsinki

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  • The world’s first horse riders

    The world’s first horse riders

    Newswise — The researchers discovered evidence of horse riding by studying the remains of human skeletons found in burial mounds called kurgans, which were between 4500-5000 years old. The earthen burial mounds belonged to the Yamnaya culture. The Yamnayans had migrated from the Pontic-Caspian steppes to find greener pastures in today´s countries of Romania and Bulgaria up to Hungary and Serbia.

    Yamnayans were mobile cattle and sheep herders, now believed to be on horseback.

    “Horseback-riding seems to have evolved not long after the presumed domestication of horses in the western Eurasian steppes during the fourth millennium BCE. It was already rather common in members of the Yamnaya culture between 3000 and 2500 BCE”, says Volker Heyd, Professor of Archaeology at the University of Helsinki and a member of the international team, which made the discovery.

    These regions west of the Black Sea constitute a contact zone where mobile groups of herdsmen from the Yamnaya culture first encountered the long-established farmer communities of Late Neolithic and Chalcolithic traditions. For decades, the Early Bronze Age expansion of steppe people into southeastern Europe was explained as a violent invasion.

    With the advent of ancient DNA research, the differences between these migrants from the east and members of local societies became even more pronounced.

    “Our research is now beginning to provide a more nuanced picture of their interactions. For example, findings of physical violence as were expected are practically non-existent in the skeletal record so far. We also start understanding the complex exchange processes in material culture and burial customs between newcomers and locals in the 200 years after their first contact”, explains Bianca Preda-Bălănică, another team member from the University of Helsinki. 

    Horse riding is a pivotal moment in human history

    The use of animals for transport, in particular the horse, marked a turning point in human history. The considerable gain in mobility and distance had profound effects on land use, trade, and warfare. Current research has mostly focused on the horses themselves. However, horse-riding is an interaction of two components – the mount and its rider – and human remains are available in larger numbers and more complete condition than early horse remains. Since horseback riding is possible without specialized equipment, the absence of archaeological finds with regard to earliest horsemanship does not come unexpected.

    Traces of horsemanship can be found in the skeletons

    “We studied over 217 skeletons from 39 sites of which about 150 found in the burial mounds belong to the Yamnayans. Diagnosing activity patterns in human skeletons is not unambiguously. There are no singular traits that indicate a certain occupation or behavior. Only in their combination, as a syndrome, symptoms provide reliable insights to understand habitual activities of the past.”, explains Martin Trautmann, Bioanthropologist in Helsinki and the lead author of the study.

    The international team decided to use a set of six diagnostic criteria established as indicators of riding activity (the so-called “horsemanship syndrome”):

    1. Muscle attachment sites on pelvis and thigh bone (femur);

    2. Changes in the normally round shape of the hip sockets;

    3. Imprint marks caused by pressure of the acetabular rim on the neck of the femur;

    4. The diameter and form of the femur shaft;

    5. Vertebral degeneration caused by repeated vertical impact;

    6. Traumata that typically can be caused by falls, kicks or bites from horses.

    To increase the diagnostic reliability, the team also used a stricter filtering method and developed a scoring system that takes into account the diagnostic value, distinctiveness and reliability of each symptom. Altogether, out of the 156 adult individuals of the total sample at least 24 (15.4%) can be classified as ‘possible riders’, while five Yamnaya and two later as well as two possibly earlier individuals qualify as ‘highly probable riders’. “The rather high prevalence of these traits in the skeleton record, especially with respect to the overall limited completeness, show that these people were horse riding regularly”, Trautmann states.

    If the primary use of horseback riding was as a convenience in a mobile pastoral lifestyle, in allowing a more effective herding of cattle, as means of swift and far-ranging raids or just as symbol of status needs further research.

    Could it all have happened even earlier?

    “We have one intriguing burial in the series” remarks David Anthony, emeritus Professor of Hartwick College USA and also senior co-author in the study.

    “A grave dated about 4300 BCE at Csongrad-Kettöshalom in Hungary, long suspected from its pose and artifacts to have been an immigrant from the steppes, surprisingly showed four of the six riding pathologies, possibly indicating riding a millennium earlier than Yamnaya. An isolated case cannot support a firm conclusion, but in Neolithic cemeteries of this era in the steppes, horse remains were occasionally placed in human graves with those of cattle and sheep, and stone maces were carved into the shape of horse heads. Clearly, we need to apply this method to even older collections.”

     

    Short fact box: Who were the Yamnayans?

    The Yamnayans were a population and culture that evolved in the Pontic-Caspian steppes at the end of the fourth millennium BCE.

    By adopting the key innovation wheel and wagon, they were able to greatly enhance their mobility and exploit a huge energy resource otherwise out of reach, the sea of steppe grass away from the rivers, enabling them to keep large herds of cattle and sheep. Thus committing to a new way-of-life, these pastoralists if not first true nomads in the world expanded dramatically within the next two centuries to cover more than 5000 kilometers between Hungary in west and, in form of the so-called Afanasievo culture, Mongolia and western China in the east. Having buried their dead in grave pits under big mounds, called kurgans, the Yamnayans are said to be the first having spread proto-Indo-European languages.

    More information on the research:

    https://www.helsinki.fi/en/researchgroups/the-yamnaya-impact-on-prehistoric-europe

    University of Helsinki

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  • New AI methods to tackle the illegal wildlife trade on the Internet

    New AI methods to tackle the illegal wildlife trade on the Internet

    Newswise — Scientists applied machine vision models and were able to deduce from the context of an image if it pertained to the sale of a live animal. These methods make it possible to flag the posts which may be selling animals illegally.

    Illegal wildlife trade is estimated to be a multi-billion dollar industry where hundreds of species are traded globally. A considerable proportion of the illegal wildlife trade now uses online marketplaces to advertise and sell live animals or animal products as it can reach more buyers than previously possible. With the trade happening across the Internet it is extremely challenging to manually search through thousands of posts and methods for automated filtering are needed.

    Compared to using computer vision to identify species from images, the identification of images related to illegal wildlife trade of species is rendered difficult by the need to identify the context in which the species are portrayed.

    In a new article published in Biological Conservation, scientists based at the Helsinki Lab of Interdisciplinary Conservation Science, University of Helsinki, have filled this gap and developed an automated algorithm using machine learning to identify such image content in the digital space.

    “This is the first-time machine vision models have been applied to deduce the context of an image to identify the sale of a live animal. When a seller is advertising an animal for sale, many times the advertisement is accompanied with an image of the animal in a captive state. This differs from non-captive images, for example a picture of an animal taken by a tourist in a national park. Using a technique called feature visualisation, we demonstrated that our models could take into account both the presence of an animal in the image, and the surrounding environment of the animal in the image. Thus, making it possible to flag the posts which may be selling animals illegally.” says Dr. Ritwik Kulkarni, the lead-author of this study.

    As part of their research, scientists trained 24 different neural-net models on a newly created dataset, under various experimental conditions. The top performing models achieved very high accuracy and were able to discern well between natural and captive contexts. Another interesting feature of the study is that the models were also tested and performed well on data acquired from a source unrelated to training data, therefore showing capability to work well to the identification of other content on the Internet.

    “These methods are a game changer in our work that seeks to enhance automated identification of illegal wildlife trade content from digital sources. We are now upscaling this work to include more taxonomic groups beyond mammals and to develop new models that can identify image and text content simultaneously.”, says Associate Professor Enrico Di Minin, the other co-author who heads the Helsinki Lab of Interdisciplinary Conservation Science.

    The scientists are planning to make their methods openly available for the use of the broader scientific and practitioners’ community.

    University of Helsinki

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  • Beyond Mendel: FinnGen study sheds new light on well-established theories of genetic inheritance

    Beyond Mendel: FinnGen study sheds new light on well-established theories of genetic inheritance

    Newswise — A large-scale biobank-based study performed in Finland has discovered several new disease genes as well as new insights on how known genetic factors affect disease. The study highlights an underappreciated complexity in the dosage effects of genetic variants.

    An international team of scientists led by researchers at the University of Helsinki and the Broad Institute of MIT and Harvard examined the effects of 44,370 genetic variants on more than 2000 diseases in almost 177,000 Finnish biobank participants. The study focused on so-called coding genetic variants, i.e. variants that are known to change the protein product of the gene. 

    The results of the study, published in Nature on January 18, 2023, convey that the reality of genetic inheritance is more complex than the Mendelian inheritance laws taught in biology classes all around the world.

    What is special about the study, apart from the size of the data set, is that the team  searched at scale specifically for diseases that one only gets if one inherited a dysfunctional genetic variant from both parents (recessive inheritance). 

    “Researchers usually only search for additive effects when they try to find common genetic variants that influence disease risk. It is more challenging to identify recessively inherited effects on diseases as you need very large sample sizes to find the rare occasions where individuals have two dysfunctional variants”, explains Dr Henrike Heyne, first author of the study from the Institute for Molecular Medicine Finland FIMM, University of Helsinki (now group leader at HPI, Germany). 

    However, the extensive FinnGen study sample, collected from Finland, offers an ideal setting for such studies. The Finnish population has experienced several historical events that have led to a reduction of the population size and also been relatively isolated from other European populations. For this reason, a subset of dysfunctional and therefore potentially disease-causing genetic variants are present at higher frequencies, making the search for new rare disease associations of recessive inheritance easier.

    Acknowledging this benefit, the researchers performed genome-wide association studies (GWAS) on 2,444 diseases derived from national healthcare registries, testing both additive and recessive inheritance models. 

    As a result, the team was able to detect known and novel recessive associations across a broad spectrum of traits such as retinal dystrophy, adult-onset cataract, hearing loss and female infertility that would have been missed with the traditional additive model.

    “Our study showed that the search for recessive effects in genome-wide association studies can be worthwhile, especially if somewhat rarer genetic variants are included, as is the case in the FinnGen study”, says Henrike Heyne. 

    In addition, the dataset has provided a new perspective on the inheritance of known disease variants. For rare disease genes, inheritance is traditionally almost exclusively described as recessive or dominant. The study shows, however, that the reality is somewhat more diverse. 

    The researchers found, for example, that some variants that are known to cause genetic disease with recessive inheritance also have some attenuated effects when only one disease-causing variant is present, which other studies confirm. They also find genetic variants with beneficial effects (protecting from heart arrhythmia or protecting from hypertension) in genes that are associated with severe disease. 

    These results demonstrate that the so-called Mendelian laws based on the experiments with peas done in 1856, in a monastery garden near Brno (today Czech Republic) by the monk Gregor Mendel do not fully capture all aspects of inheritance of rare diseases.

    “With the increased usage of carrier screening in the general population, whereby many individuals are learning that they are carriers for multiple pathogenic variants, understanding which of those variants may have mild health effects could be incredibly important for these individuals”, says Heidi Rehm, an author on the paper and Professor of Pathology at Massachusetts General Hospital and Medical Director of the Broad Clinical Lab. 

    The study could contribute to the integration of the traditionally separate but more and more overlapping scientific fields that study either the effect of rare genetic variants on rare disease or the effect of common genetic variants on common disease. The results demonstrate how large biobank studies, particularly in founder populations such as Finland, can broaden our understanding of the sometimes more complex dosage effects of genetic variants on disease.

    “This study highlights the importance of integrating the large-scale biobank approach with detailed insights that emerge from rare disease studies. A more complete understanding of the role of genetic variation in each gene only emerges when we take account of all of the perspectives and insights from diverse study designs”, says Mark Daly, senior author on the paper and Director of the Institute for Molecular Medicine Finland (FIMM) and faculty member at Massachusetts General Hospital and the Broad Institute.

    Original publication: Mono- and biallelic variant effects on disease at biobank scale. H. O. Heyne, J. Karjalainen, K. J. Karczewski, S. M. Lemmelä, W. Zhou, FinnGen, A. S. Havulinna, M. Kurki, H. L. Rehm, A. Palotie, M. J. Daly. Nature 2023, DOI: 10.1038/s41586-022-05420-7. 

    University of Helsinki

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  • New study models the transmission of foreshock waves towards Earth

    New study models the transmission of foreshock waves towards Earth

    Newswise — An international team of scientists led by Lucile Turc, an Academy Research Fellow at the University of Helsinki and supported by the International Space Science Institute in Bern has studied the propagation of electromagnetic waves in near-Earth space for three years. The team has studied the waves in the area where the solar wind collides with Earth’s magnetic field called foreshock region, and how the waves are transmitted to the other side of the shock. The results of the study are now published in Nature Physics.

    “How the waves would survive passing through the shock has remained a mystery since the waves were first discovered in the 1970s. No evidence of those waves has ever been found on the other side of the shock”, says Turc.

    The team has used a cutting-edge computer model, Vlasiator, developed at the University of Helsinki by a group led by professor Minna Palmroth, to recreate and understand the physical processes at play in the wave transmission. A careful analysis of the simulation revealed the presence of waves on the other side of the shock, with almost identical properties as in the foreshock.

    “Once it was known what and where to look for, clear signatures of the waves were found in satellite data, confirming the numerical results”, says Lucile Turc.

    The waves in the foreshock can enter the Earth’s magnetic field

    Around our planet is a magnetic bubble, the magnetosphere, which shields us from the solar wind, a stream of charged particles coming from the Sun. Electromagnetic waves, appearing as small oscillations of the Earth’s magnetic field, are frequently recorded by scientific observatories in space and on the ground. These waves can be caused by the impact of the changing solar wind or come from the outside of the magnetosphere.

    The electromagnetic waves play an important role in creating adverse space weather around our planet: they can for example accelerate particles to high energies, which can then damage spacecraft electronics, and cause these particles to fall into the atmosphere.

    On the side of Earth facing the Sun, scientific observatories frequently record oscillations at the same period as those waves that form ahead of the Earth’s magnetosphere, singing a clear magnetic song in a region of space called the foreshock.

    This has led space scientists to think that there is a connection between the two, and that the waves in the foreshock can enter the Earth’s magnetosphere and travel all the way to the Earth’s surface. However, one major obstacle lies in their way: the waves must cross the shock before reaching the magnetosphere.

    “At first, we thought that the initial theory proposed in the 1970s was correct: the waves could cross the shock unchanged. But there was an inconsistency in the wave properties that this theory could not reconcile, so we investigated further”, says Turc.

    “Eventually, it became clear that things were much more complicated than it seemed. The waves we saw behind the shock were not the same as those in the foreshock, but new waves created at the shock by the periodic impact of foreshock waves.”

    When the solar wind flows through the shock, it is compressed and heated. The shock strength determines how much compression and heating take place. Turc and her colleagues showed that foreshock waves are able to tune the shock, making it alternatively stronger or weaker when wave troughs or crests arrive at the shock. As a result, the solar wind behind the shock changes periodically and creates new waves, in concert with the foreshock waves.

    The numerical model also pinpointed that these waves could only be detected in a narrow region behind the shock, and that they could easily be hidden by the turbulence in this region. This likely explains why they had not been observed before.

    While the waves originating from the foreshock only play a limited role in space weather at Earth, they are of great importance to understand the fundamental physics of our universe.

    University of Helsinki

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