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  • Concern grows as bird flu outbreaks continue to rise among California dairy herds

    Concern grows as bird flu outbreaks continue to rise among California dairy herds

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    Reports of H5N1 bird flu outbreaks at California dairy herds are continuing to rise as the nation’s largest milk producer scrambles to contain the spread.

    On Monday, officials reported that the number of infected dairy herds in the Central Valley had doubled over the weekend, rising from 17 to 34.

    A spokesman for the California Department of Food and Agriculture said they expect more cases to be announced in the coming days and weeks, as testing continues.

    With roughly 1,100 dairy herds in California — and 90% located in the San Joaquin Valley — concern is palpable, say industry insiders. Outbreaks interrupt milk production at affected dairies. Not only are the infected herds quarantined, but special testing must be conducted at nearby dairy farms as well.

    “Farmers are genuinely worried about the virus and do not feel it’s under control,” said Anja Raudabaugh, CEO of Western United Dairies, the trade association of California dairy farmers. She added the industry is hoping a vaccine for cows will be developed “that would protect our animals” and be compliant under trade agreements.

    The threat to humans is considered low. However, infectious disease experts worry that the longer the the virus remains present in dairy farms, the greater the likelihood it could mix with a human virus and pose a greater risk to people.

    Both state and federal health officials say milk is safe to drink, as long as it has been pasteurized.

    Steve Lyle, an agriculture department spokesman, said the agency’s call to to test dairies within six miles of infected herds, as well dairies that share share personnel or equipment with infected herds, has allowed officials to detect infected dairies “at about the time or just before they are showing clinical signs –- during their incubation period.”

    The U.S. Department of Agriculture is working on a bovine vaccination for bird flu, but noted in a statement that this does not mean efforts to control the virus have failed.

    “The pursuit of bovine vaccine development does not mean that biosecurity measures have failed,” the agency said in a prepared statement. “Nor does it mean that USDA believes the virus is here to stay. Vaccine development is one part of an overall strategy that includes enhanced and strengthened biosecurity efforts to contain the virus and help mitigate spread.”

    The statement went on to say that a vaccine could prove helpful in eliminating the virus from the nation’s dairy cattle, but it’s just one tool.

    “We continue to deploy all available efforts, including biosecurity and mandating the testing of lactating dairy cattle moving across state lines,” the statement said.

    It is still unclear how the virus got into the state, but genetic sequencing suggests the virus is similar to that found in infected cattle in other states — and that it did not come from wild birds.

    It is also unclear what impact the disease will have on milk production in the state, although Raudabaugh said it will not affect milk prices.

    “Dairy is a ‘loss leader’ at the grocery store,” she said, and is often the major incentive for other items in the store.

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    Susanne Rust

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  • California reports a total of eight H5N1 bird flu outbreaks among dairy herds

    California reports a total of eight H5N1 bird flu outbreaks among dairy herds

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    The number of California dairy herds reported to have outbreaks of H5N1 bird flu has grown to eight.

    Officials have refused to disclose the locations of the infected herds, but have said they are in close proximity somewhere in California’s Central Valley — an 18,000-square-mile expanse that is roughly the size of Vermont and New Hampshire combined.

    They say they are still investigating the source of the virus, but at a news conference Thursday, federal officials said genetic sequencing from the first three outbreaks suggests the strain is similar to that seen in other states. They say it does not appear to have been caused by wild birds or animals.

    “This is the same virus that we’ve detected in herds since the beginning of the emergence of H5N1 in dairy cows,” said Eric Deeble, deputy under secretary for marketing and regulatory programs at the United States Department of Agriculture. “Sequencing of the samples from the additional five premises will likely be completed later this week or over the weekend.”

    He said the California Department of Food and Agriculture has been “conducting a very thorough traceback, and all the herds that have been detected in California to date have been through their investigation.”

    There have been 201 herds infected by the virus across 14 states since the outbreak was first reported in March.

    State officials continue to reassure the public that the risk to the general population is low, and that pasteurized milk and dairy products are safe for human consumption.

    Deeble said his agency is in the process of authorizing field safety studies for a H5N1 cow vaccine.

    An agency spokesman said vaccine development does not suggest that the biosecurity protocols that the USDA and state governments have followed have failed. Nor does it mean the virus is here to stay.

    “Vaccine development is one part of an overall strategy that includes enhanced and strengthened biosecurity efforts to contain the virus and help mitigate spread,” said Will Clement, a USDA spokesman.

    “Bovine vaccines may prove to be an important tool to eventually help eliminate the virus from the nation’s dairy cattle herd, but developing a vaccine requires many steps and it will take time to test, approve, and distribute a successful vaccine,” he said. “This is why we have opened the pathway to vaccine field trials even as we continue to deploy all available efforts, including emphasizing biosecurity and mandating the testing lactating dairy cattle moving across state lines.”

    In addition, federal health officials say they have not been able to sequence the entirety of the H5N1 sample isolated from a human case in Missouri. That person had no known contact with dairy or poultry, and a preliminary investigation has not been able to determine the source of infection.

    There have been no reports of infected dairy herds in Missouri.

    “Right now, evidence points to this being a one off,” said Nirav Shah, principal deputy director at the Centers for Disease Control and Prevention.

    Shah said the patient, who was hospitalized with flu-like symptoms and has since recovered, had only low levels of the virus circulating through their body. As a result, sequencing has been difficult.

    While officials can safely say the virus is of the H5 sub-type, they have not been able to sequence the N-part.

    But the H5 part appears to resemble the H5 subtype in infected dairy cows.

    “We’re throwing everything we’ve got at this, but ultimately, a full sequence may not be technically feasible because of the low concentration of viral RNA,” Shah said.

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    Susanne Rust

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  • More cows are being tested and tracked for bird flu. Here’s what that means

    More cows are being tested and tracked for bird flu. Here’s what that means

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    U.S. health and agriculture officials are ramping up testing and tracking of bird flu in dairy cows in an urgent effort to understand — and stop — the growing outbreak.So far, the risk to humans remains low, officials said, but scientists are wary that the virus could change to spread more easily among people.The virus, known as Type A H5N1, has been detected in nearly three dozen dairy herds in eight states. Inactive viral remnants have been found in grocery store milk. Tests also show the virus is spreading between cows, including those that don’t show symptoms, and between cows and birds, according to the U.S. Department of Agriculture.Starting Monday, hundreds of thousands of lactating dairy cows in the U.S. will have to be tested — with negative results — before they can be moved between states, under terms of a new federal order.Here’s what you need to know about the ongoing bird flu investigation:WHY IS THIS OUTBREAK SO UNUSUAL?This strain of what’s known as highly pathogenic avian influenza has been circulating in wild birds for decades. In recent years, it has been detected in scores of mammals around the world. Most have been wild animals, such as foxes and bears, that ate sick or dying birds. But it’s also appeared in farmed minks. It’s shown up in aquatic mammals, such as harbor seals and porpoises, too. The virus was even found in a polar bear in northern Alaska.The virus was discovered in ruminants — goats and then dairy cows — in the U.S. this spring, surprising many scientists who have studied it for years.“When we think of influenza A, cows are not typically in that conversation,” said Richard Webby, an influenza expert at St. Jude Children’s Research Hospital.Flu viruses are notorious for adapting to spread among new species, so detection in dairy cows raises concerns it could spread to people, Webby said.HOW LONG HAS BIRD FLU BEEN SPREADING IN COWS?Scientists confirmed the virus in cows in March after weeks of reports from dairy farms that the animals were falling ill. Symptoms included lethargy, sharply reduced milk supply and changes to the milk, which became thick and yellow.Finding remnants of the virus in milk on the market “suggests that this has been going on longer, and is more widespread, than we have previously recognized,” said Matthew Aliota, a veterinary medicine researcher at the University of Minnesota.Under pressure from scientists, USDA officials released new genetic data about the outbreak this week.The data omitted some information about when and where samples were collected, but showed that the virus likely was spread by birds to cattle late last year, said Michael Worobey, an evolutionary biologist with the University of Arizona.Since then, it has spread among cattle and among farms, likely through contact with physical objects such as workers’ shoes, trucks or milking machines, Worobey said.And then the cows spread the virus back to birds, he said.“The genetic evidence is as clear as could be,” Worobey said. “Birds that are sampled on these farms have viruses with clear mammalian adaptations.”WHAT DO SCIENTISTS SAY ABOUT EFFORTS TO TRACK THE OUTBREAK?Several experts said the USDA’s plans to require testing in cows are a good start.“We need to be able to do greater surveillance so that we know what’s going on,” said Thomas Friedrich, a virology professor at the University of Wisconsin’s veterinary school.Worobey said the ideal would be to screen every herd. Besides looking for active infections, agriculture officials also should be looking at whether cows have antibodies to the virus, indicating past infections, he said.”That is a really accessible and quick way to find out how widespread this is,” he said.More testing of workers exposed to infected animals is also crucial, experts said. Some farm owners and some individual workers have been reluctant to work with public health officials during the outbreak, experts have said.“Increased surveillance is essentially an early warning system,” Aliota said. “It helps to characterize the scope of the problem, but also to head off potentially adverse consequences.”HOW BIG A RISK DOES BIRD FLU POSE FOR PEOPLE?Scientists are working to analyze more samples of retail milk to confirm that pasteurization, or heat-treating, kills the H5N1 virus, said Dr. Don Prater, acting director of the FDA’s food safety center. Those results are expected soon.While the general public doesn’t need to worry about drinking pasteurized milk, experts said they should avoid raw or unpasteurized milk.Also, dairy farm workers should consider extra precautions, such as masking, hand washing and changing work clothes, Aliota said.So far, 23 people have been tested for the virus during the outbreak in dairy cows, with one person testing positive for a mild eye infection, CDC officials said. At least 44 people who were exposed to infected animals in the current outbreak are being monitored for symptoms.WHAT ARE SCIENTISTS’ CONCERNS FOR THE FUTURE?David O’Connor, a virology expert at the University of Wisconsin-Madison, likened recent bird flu developments to a tornado watch versus a warning.“There are some of the ingredients that would be necessary for there to be a threat, but we’re not there,” he said. As with a tornado watch, “you wouldn’t change anything about how you live your daily life, but you would maybe just have a bit of increased awareness that something is happening.”Worobey said this is the kind of outbreak “that we were hoping, after COVID, would not go unnoticed. But it has.”He said ambitious screening is needed “to detect things like this very quickly, and potentially nip them in the bud.”

    U.S. health and agriculture officials are ramping up testing and tracking of bird flu in dairy cows in an urgent effort to understand — and stop — the growing outbreak.

    So far, the risk to humans remains low, officials said, but scientists are wary that the virus could change to spread more easily among people.

    The virus, known as Type A H5N1, has been detected in nearly three dozen dairy herds in eight states. Inactive viral remnants have been found in grocery store milk. Tests also show the virus is spreading between cows, including those that don’t show symptoms, and between cows and birds, according to the U.S. Department of Agriculture.

    Starting Monday, hundreds of thousands of lactating dairy cows in the U.S. will have to be tested — with negative results — before they can be moved between states, under terms of a new federal order.

    Here’s what you need to know about the ongoing bird flu investigation:

    WHY IS THIS OUTBREAK SO UNUSUAL?

    This strain of what’s known as highly pathogenic avian influenza has been circulating in wild birds for decades. In recent years, it has been detected in scores of mammals around the world. Most have been wild animals, such as foxes and bears, that ate sick or dying birds. But it’s also appeared in farmed minks. It’s shown up in aquatic mammals, such as harbor seals and porpoises, too. The virus was even found in a polar bear in northern Alaska.

    The virus was discovered in ruminants — goats and then dairy cows — in the U.S. this spring, surprising many scientists who have studied it for years.

    “When we think of influenza A, cows are not typically in that conversation,” said Richard Webby, an influenza expert at St. Jude Children’s Research Hospital.

    Flu viruses are notorious for adapting to spread among new species, so detection in dairy cows raises concerns it could spread to people, Webby said.

    HOW LONG HAS BIRD FLU BEEN SPREADING IN COWS?

    Scientists confirmed the virus in cows in March after weeks of reports from dairy farms that the animals were falling ill. Symptoms included lethargy, sharply reduced milk supply and changes to the milk, which became thick and yellow.

    Finding remnants of the virus in milk on the market “suggests that this has been going on longer, and is more widespread, than we have previously recognized,” said Matthew Aliota, a veterinary medicine researcher at the University of Minnesota.

    Under pressure from scientists, USDA officials released new genetic data about the outbreak this week.

    The data omitted some information about when and where samples were collected, but showed that the virus likely was spread by birds to cattle late last year, said Michael Worobey, an evolutionary biologist with the University of Arizona.

    Since then, it has spread among cattle and among farms, likely through contact with physical objects such as workers’ shoes, trucks or milking machines, Worobey said.

    And then the cows spread the virus back to birds, he said.

    “The genetic evidence is as clear as could be,” Worobey said. “Birds that are sampled on these farms have viruses with clear mammalian adaptations.”

    WHAT DO SCIENTISTS SAY ABOUT EFFORTS TO TRACK THE OUTBREAK?

    Several experts said the USDA’s plans to require testing in cows are a good start.

    “We need to be able to do greater surveillance so that we know what’s going on,” said Thomas Friedrich, a virology professor at the University of Wisconsin’s veterinary school.

    Worobey said the ideal would be to screen every herd. Besides looking for active infections, agriculture officials also should be looking at whether cows have antibodies to the virus, indicating past infections, he said.

    “That is a really accessible and quick way to find out how widespread this is,” he said.

    More testing of workers exposed to infected animals is also crucial, experts said. Some farm owners and some individual workers have been reluctant to work with public health officials during the outbreak, experts have said.

    “Increased surveillance is essentially an early warning system,” Aliota said. “It helps to characterize the scope of the problem, but also to head off potentially adverse consequences.”

    HOW BIG A RISK DOES BIRD FLU POSE FOR PEOPLE?

    Scientists are working to analyze more samples of retail milk to confirm that pasteurization, or heat-treating, kills the H5N1 virus, said Dr. Don Prater, acting director of the FDA’s food safety center. Those results are expected soon.

    While the general public doesn’t need to worry about drinking pasteurized milk, experts said they should avoid raw or unpasteurized milk.

    Also, dairy farm workers should consider extra precautions, such as masking, hand washing and changing work clothes, Aliota said.

    So far, 23 people have been tested for the virus during the outbreak in dairy cows, with one person testing positive for a mild eye infection, CDC officials said. At least 44 people who were exposed to infected animals in the current outbreak are being monitored for symptoms.

    WHAT ARE SCIENTISTS’ CONCERNS FOR THE FUTURE?

    David O’Connor, a virology expert at the University of Wisconsin-Madison, likened recent bird flu developments to a tornado watch versus a warning.

    “There are some of the ingredients that would be necessary for there to be a threat, but we’re not there,” he said. As with a tornado watch, “you wouldn’t change anything about how you live your daily life, but you would maybe just have a bit of increased awareness that something is happening.”

    Worobey said this is the kind of outbreak “that we were hoping, after COVID, would not go unnoticed. But it has.”

    He said ambitious screening is needed “to detect things like this very quickly, and potentially nip them in the bud.”

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  • We Have a Mink Problem

    We Have a Mink Problem

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    Bird flu, at this point, is somewhat of a misnomer. The virus, which primarily infects birds, is circulating uncontrolled around much of the world, devastating not just birds but wide swaths of the animal kingdom. Foxes, bobcats, and pigs have fallen ill. Grizzly bears have gone blind. Sea creatures, including seals and sea lions, have died in great numbers.

    But none of the sickened animals has raised as much concern as mink. In October, a bird-flu outbreak erupted at a Spanish mink farm, killing thousands of the animals before the rest were culled. It later became clear that the virus had spread between the animals, picking up a mutation that helped it thrive in mammals. It was likely the first time that mammal-to-mammal spread drove a huge outbreak of bird flu. Because mink are known to spread certain viruses to humans, the fear was that the disease could jump from mink to people. No humans got sick from the outbreak in Spain, but other infections have spread from mink to humans before: In 2020, COVID outbreaks on Danish mink farms led to new mink-related variants that spread to a small number of humans.

    As mammals ourselves, we have good reason to be concerned. Outbreaks on crowded mink farms are an ideal scenario for bird flu to mutate. If, in doing so, it picks up the ability to spread between humans, it could potentially start another global pandemic. “There are many reasons to be concerned about mink,” Tom Peacock, a flu researcher at Imperial College London, told me. Right now, mink are a problem we can’t afford to ignore.

    For two animals with very different body types, mink and humans have some unusual similarities. Research suggests that we share similar receptors for COVID, bird flu, and human flu, through which these viruses can gain entry into our bodies. The numerous COVID outbreaks on mink farms during the early pandemic, and the bird-flu outbreak in Spain, gravely illustrate this point. It’s “not surprising” that mink can get these respiratory diseases, James Lowe, a veterinary-medicine professor at the University of Illinois at Urbana-Champaign, told me. Mink are closely related to ferrets, which are so well known for their susceptibility to human flu that they’re the go-to model for flu research.

    Mink wouldn’t get sick as often, and wouldn’t be as big an issue for humans, if we didn’t keep farming them for fur in the perfect conditions for outbreaks. Many barns used to raise mink are partially open-air, making it easy for infected wild birds to come in contact with the animals, sharing not only air but potentially food. Mink farms are also notoriously cramped: The Spanish farm, for example, kept tens of thousands of mink in about 30 barns. Viral transmission would be all but guaranteed in those conditions, but the animals are especially vulnerable. Because mink are normally solitary creatures, they face significant stress in packed barns, which may further predispose them to disease, Angela Bosco-Lauth, a biomedical-sciences professor at Colorado State University, told me. And because they’re often inbred so their coats look alike, an entire population may share a similar genetic susceptibility to disease. The frequency of outbreaks among mink, Bosco-Lauth said, “may actually have less to do with the animals and more to do with the fact that we raise them in the same way … we would an intensive cattle farm or chickens.”

    So far, there’s no evidence that mink from the Spanish farm spread bird flu to humans: None of the workers tested positive for the virus, and since then, no other mink farms have reported outbreaks. “We’re just not very susceptible” to bird flu, Lowe said. Our bird-flu receptors are tucked deep in our lungs, but when we’re exposed, most of the virus gets caught in the nose, throat, and other parts of the upper respiratory tract. This is why bird-flu infection is less common in people but is often pneumonia-level severe when it does happen. Indeed, a few humans have gotten sick and died from bird flu in the 27 years that the current strain of bird flu, known as H5N1, has circulated. This month, a girl in Cambodia died from the virus after potentially encountering a sick bird. The more virus circulating in an environment, the higher the chances a person will get infected. “It’s a dose thing,” Lowe said.

    But our susceptibility to bird flu could change. Another mink outbreak would give the virus more opportunities to keep mutating. The worry is that this could create a new variant that’s better at binding to the human flu receptors in our upper respiratory tract, Stephanie Seifert, a professor at Washington State University who studies zoonotic pathogens, told me. If the virus gains the ability to infect the nose and throat, Peacock, at Imperial College London, said, it would be better at spreading. Those mutations “would worry us the most.” Fortunately, the mutations that arose on the Spanish mink farm “were not as bad as many of us worried about,” he added, “but that doesn’t mean that the next time this happens, this will also be the case.”

    Because mink carry the receptors for both bird flu and human flu, they could serve as “mixing vessels” for the viruses to combine, researchers wrote in 2021. (Ferrets, pigs, and humans share this quality too.) Through a process called reassortment, flu viruses can swap segments of their genome, resulting in a kind of Frankenstein pathogen. Although viruses remixed in this way aren’t necessarily more dangerous, they could be, and that’s not a risk worth taking. “The previous three influenza pandemics all arose due to mixing between avian and human influenza viruses,” Peacock said.

    While there are good reasons to be concerned about mink, it is hard to gauge just how concerned we should be—especially given what we still don’t know about this changing virus. After the death of the young girl in Cambodia, the World Health Organization called the global bird flu situation “worrying,” while the CDC maintains that the risk to the public is low. Lowe said “it’s certainly not very risky” that bird flu will spill over into humans, but is worth keeping an eye on. H5N1 bird flu is not new, he added, and it hasn’t affected people en masse yet. But the virus has already changed in ways that make it better at infecting wild birds, and as it spreads in the wild, it may continue to change to better infect mammals, including humans. “We don’t understand enough to make strong predictions of public-health risk,” Jonathan Runstadler, an infectious-diseases professor at Tufts University, told me.

    As bird flu continues to spread among birds and in domestic and wild animal populations, it will only become harder to control. The virus, formally seasonal, is already present year-round in parts of Europe and Asia, and it is poised to do the same in the Americas. Breaking the chain of transmission is vital to preventing another pandemic. An important step is to avoid situations where humans, mink, or any other animal could be infected with both human and bird flu at the same time.

    Since the COVID outbreaks, mink farms have generally beefed up their biosecurity: Farm workers are often required to wear masks and protective gear, such as disposable overalls. To limit the risk to mink—and other susceptible hosts—farms need to reduce their size and density, reduce contact between mink and wild birds, and monitor the virus, Runstadler said. Some nations, including Mexico, Ecuador, have recently embraced bird-flu vaccines for poultry in light of the outbreaks. H5N1 vaccines are also available for humans, though they aren’t readily available.  Still, one of the most obvious options is to shut mink farms down. “We probably should have done that after SARS-CoV-2,” Bosco-Lauth, at Colorado State, said. Doing so is controversial, however, because the global mink industry is valuable, with a huge market in China. Denmark, which produces up to 40 percent of the world’s mink pelts, temporarily banned mink breeding in 2020 after a spate of COVID outbreaks, but the ban expired last month, and farms are returning, albeit in a limited capacity.

    But mink  are far from the only animal that poses a bird-flu risk to humans. “Frankly, with what we’re seeing with other wildlife species, there really aren’t any mammals that I would discount at this point in time,” Bosco-Lauth said. Any mammal species repeatedly infected by the virus is a potential risk, including marine mammals, such as seals. But we should be most concerned about the ones humans frequently come into close contact with, especially animals that are raised in high density, such as pigs, Runstadler said. This doesn’t pose just a human public-health concern, he said, but the potential for “ecological disruption.” Bird flu can be a devastating disease for wildlife, killing animals swiftly and without mercy.

    Whether bird flu makes the jump into humans, it isn’t the last virus that will threaten us—or mink. The era we live in has become known as the “Pandemicene,” as my colleague Ed Yong has called it, one defined by the regular spillover of viruses into humans, caused by our disruption of the normal trajectories of viral movement in nature. Mink may never pass bird flu to us. But that doesn’t mean they won’t be a risk the next time a novel influenza or coronavirus comes around. Doing nothing about mink essentially means choosing luck as a public-health strategy. Sooner or later, it will run out.

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    Yasmin Tayag

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