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  • The ‘Unthinkable’ New Reality About Bedbugs

    The ‘Unthinkable’ New Reality About Bedbugs

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    This article was originally published by Knowable Magazine.

    The stories have become horribly familiar: houses so overrun by bedbugs that the bloodsucking insects pile an inch deep on the floor. An airport shutting down gates for deep cleaning after the parasites were spotted. Fear and loathing during Fashion Week 2023 in Paris, with bedbug-detection dogs working overtime when the insects turned up in movie theaters and trains.

    For reasons that almost certainly have to do with global travel and poor pest management, bedbugs have resurfaced with a vengeance in 50 countries since the late 1990s. But recently, the resurgence has brought an added twist: When exterminators swarm out to hunt these pests, they might encounter not just one but two different kinds of bugs.

    Besides the common bedbug, Cimex lectularius, which has always made its home in the Northern Hemisphere, there are now sightings of its relative, the tropical bedbug, Cimex hemipterus, in temperate regions. Historically, this species didn’t venture that far from the equator, write the entomologists Stephen Doggett and Chow-Yang Lee in the 2023 issue of the Annual Review of Entomology. But in recent years, tropical bedbugs have turned up in the United States, Sweden, Italy, Norway, Finland, China, Japan, France, Central Europe, Spain—“even in Russia, which would have once been unthinkable,” says Lee, a professor of urban entomology at UC Riverside.

    Like the common bedbug, the tropical version has grown resistant to many standard pesticides—to the point where some experts say they wouldn’t bother spraying should their own home become infested. It has been estimated that the fight against bedbugs is costing the world economy billions annually.

    This all adds up to a sobering new reality: For many people, bedbugs are becoming a fact of life again, much as they used to be throughout humanity’s history. But as scientists race to find new strategies to combat these pests—everything from microfabricated surfaces that entrap the insects to fungal spores that invade and kill them—they also learn more about the often-bizarre biology of bedbugs, which might one day reveal the parasite’s Achilles’ heel.

    Genomics shows that bedbugs emerged 115 million years ago, before the dinosaurs went extinct. When the first humans appeared and moved into caves, the ancestors of today’s bedbugs were ready and waiting. It is thought that these insects initially fed on bats. But bats reduce their blood circulation during their sleeplike torpor state, likely making it harder for the bloodsucking parasite to feed. Presumably, then, at least some bedbug ancestors happily switched to humans.

    Since then, the bugs have followed humankind across the globe, tagging along on ancient shipping routes and modern plane rides. Preserved bedbugs were found in the quarters used by workers in ancient Egypt some 3,550 years ago.

    Bedbugs can survive a year or more without feeding. About as big as flattened apple seeds, they squeeze into tiny cracks in walls or in the joints of bed frames during the day; they crawl out at night, attracted by a sleeper’s exhaled carbon dioxide and body warmth. At the turn of the 20th century, an estimated 75 percent of homes in the U.K. contained bedbugs. Bizarre prescriptions for remedies have circulated down the years, including a recipe for “cat juice” in a pest-control guide from 1725. The formula called for suffocating and skinning a cat, roasting it on a spit, mixing the drippings with egg yolk and oil, and smearing the concoction into crevices around the bed.

    DDT (dichlorodiphenyltrichloroethane) and the pesticides that followed helped bring a few decades’ worth of respite from the 1940s to the 1990s—enough that most people forgot about the insects and didn’t recognize them when they reappeared around the turn of the millennium.

    Doggett and Lee hypothesize that the bloodsuckers’ comeback started in areas of Africa, where common and tropical bedbugs naturally coexist, and where DDT (and, later, other insecticides) were sprayed in bedrooms against malaria-carrying mosquitoes. Initially, this would have killed the majority of bed bugs too. But some resistant ones survived and multiplied.

    Bedbugs suck up more than three times their body weight in blood. As they do, they also take in any viruses or other infectious agents that might circulate in the body of their prey, such as hepatitis B and HIV. They have never been found to transmit these pathogens in the wild—but this doesn’t mean that the parasites are benign. “Bedbugs produce some of the most irritating bites of all insects,” says Doggett, a medical entomologist at Westmead Hospital, in Sydney, Australia. “If I receive one, I don’t sleep, as I react so badly. If there are lots of bedbugs, the bites are horrendous.” There have been cases where people have accidentally set mattresses on fire in desperate attempts to chase off the bugs, sometimes burning down their home in the process.

    Humans aren’t the only ones to react so strongly. The Cimicidae family, to which bedbugs belong, comprises about 100 species. Almost all prefer to bite nonhuman animals, such as birds. Biologists have observed cliff-swallow chicks jumping to their death from heavily infested nests rather than enduring the bites.

    Infestations in which hundreds of bugs may descend upon a bed at night can cause a human sleeper to become anemic. Victims can even develop insomnia, anxiety, and depression. They may find themselves shunned by friends, blacklisted by landlords, and—being sleep-deprived—more prone to car accidents and problems at work.

    Indirectly, at least, bedbugs may cause human deaths. Doggett has noticed that some people in Africa are giving up the bed nets that protect them from mosquitoes and life-threatening malaria infections because bedbugs hide in them. “In some regions, malaria cases are on the rise, and we think that bedbugs are contributing to this,” he says.

    By now, bedbug resistance has been reported against most of the prevalent insecticides, including organochlorines, organophosphates, carbamates, neonicotinoids, aryl pyrroles, and pyrethroids. Some of today’s bedbug strains tolerate pesticide doses that are many thousands of times higher than those that used to consistently kill them. Resistant bedbugs have either developed gene mutations that prevent pesticides from binding effectively to their cells or they produce enzymes that quickly break down the toxins in their body. Others are growing thicker exoskeletons that the poisons can’t easily penetrate.

    An investigation some years back into a hospital in Cleveland discovered that new bedbugs showed up in the facility every 2.2 days on average. And tropical bedbugs seem just as happy in our modern indoors as the common variety does. “Heating and air-conditioning have made our living environments more standardized,” Lee says. “If a tropical bedbug happens to be introduced to a house in Norway, it can now survive there even in winter.”

    Currently, the only bedbug sprays that still tend to work are certain combination products that blend different classes of pesticides. But it’s only a matter of time before these, too, will fail, experts say: Reports of resistance have already been documented. More and more, exterminators incorporate nonchemical approaches such as heat treatments, in which trained professionals warm up rooms to more than 120 degrees Fahrenheit for several hours. They sometimes sprinkle a floury dust called diatomaceous earth around rooms, which clings to those bugs that hide from the heat in wall cracks or under mattresses. The dust abrades the insect’s exoskeleton, dehydrating it to death.

    Such measures—combined with more awareness—have helped plateau, or even partly reverse, the spread of bedbugs in some places. In New York City, for example, bedbug complaints fell by half from 2014 to 2020, from 875 complaints a month to 440, on average. To be sure, that’s still 14 complaints a day.

    But although effective, nonchemical methods tend to work slowly. “It’s very common that an elimination takes one to two or even three months,” says Changlu Wang, an entomologist at Rutgers University. Meanwhile, residents must keep living in their infested quarters.

    Nonchemical measures may also be expensive, because they can require laborious steps such as sealing cracks in walls and physically removing bugs by vacuuming. Although a quick (but increasingly futile) spraying of pesticides may cost a few hundred dollars, mechanical eradications can run as high as several thousand dollars. This puts effective bedbug control out of many people’s reach, making them vulnerable to entrenched infestations that can spread through communities.

    The result is that the epidemic has shifted to the poor, says Michael Levy, an epidemiologist at the University of Pennsylvania: “While many cities now have bedbug policies, very few provide much assistance to those who cannot afford treatment.” A 2016 report on 2,372 low-income apartment units in 43 buildings across four New Jersey cities found that 3.8 percent to 29.5 percent were infested with bedbugs.

    The northward spread of tropical bedbugs complicates matters further. Although the two species look alike, tropical bedbugs have more hair on their legs, which allows them to climb out of many of the smooth-walled traps that are used to monitor homes. This means that infestations could stay undetected longer, Lee says. And the larger a population grows, the harder it is to get rid of.

    To fight back, researchers find inspiration in traditional wisdom. In the Balkan region, homeowners used to spread the leaves of the bean plant Phaseolus vulgaris L. around their beds. The leaves possess tiny hooks on their surface that trap the bugs. Now scientists at UC Irvine are developing a “physical insecticide” in the shape of a synthetic material sporting sharply curved microstructures that mimic those on the bean leaves. These irreversibly impale the feet of the bedbugs, Catherine Loudon, a biology professor at UC Irvine, wrote in a 2022 paper in Integrative and Comparative Biology: “The bugs are unable to get away once they are pierced.”

    Other recent approaches are also rooted in nature. Scientists have found, for example, that essential oils can repel bedbugs. However, the effect is mostly temporary. Certain fungal spores, on the other hand, work permanently. “Basically, the spores go into the body of the bedbug and kill it,” Wang says. At least one product containing the insect-killing fungus Beauveria bassiana is now available in the United States.

    Researchers continue to be fascinated by the biology of this insect, particularly its sex life. Although female bedbugs possess a normal set of genitalia, the males typically mate by stabbing a needle-sharp penis straight into the female’s abdomen to inject sperm. They usually do this just after a female bedbug has fed, because this makes her too engorged to protect herself.

    Having to cope with these frequent injuries has led female bedbugs to evolve the only immunity organ in the insect kingdom, says Klaus Reinhardt, a zoologist at the Dresden University of Technology, in Germany. They have also evolved a remarkably elastic material that covers the parts of their abdomen most likely to be stabbed. “It resembles one of those self-sealing injection bottles that close up again when you pull the needle,” Reinhardt says.

    Although this knowledge will likely do little to combat these pests directly, answering another question might: Why don’t bedbugs stay on their host’s body, as lice do? As it turns out, bedbugs don’t like our smell. Certain lipids in human skin repel the bugs, according to a 2021 study in Scientific Reports. This makes them retreat to daytime hiding places, marking their trails with pheromones.

    Already, exterminators try to trap bedbugs with fake trail markings. And one day, we might deter the insects from spreading by treating suitcases with smells they despise.

    But for now, caution remains the best approach. Experts advise that travelers check accommodations for bedbug-defecation stains: on mattress seams and furniture, and behind headboards. (The insects poop as frequently as a few dozen times after every blood meal, often right next to their victims.) Suitcases should be kept in the hotel bathtub or wrapped in a plastic bag. Upon arrival back home, the luggage’s contents should be put into the clothes dryer for at least 30 minutes at the highest setting, or into a very cold freezer for several days.

    If bedbugs do invade a home, “the biggest mistake is to try and get rid of them on one’s own,” Doggett says. “The average person doesn’t appreciate how challenging it is to control bedbugs and will use supermarket insecticides that are labeled for bedbugs but don’t work. The infestation will spread, and the costs escalate.”

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    Ute Eberle

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  • Bacteria, stay out!

    Bacteria, stay out!

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    Hospital germs and pathogens are not always transmitted directly from person to person. They can also spread via germ-contaminated surfaces and objects.

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    Empa, Swiss Federal Laboratories for Materials Science and Technology

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  • Mosasaurs had discriminating taste, palaeo-CSI finds

    Mosasaurs had discriminating taste, palaeo-CSI finds

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    Joint press release Utrecht University and Natural History Museum Maastricht

    Newswise — The cradle of palaeontology – the study of fossil remains of animals and plants – lies in the Maastricht limestones, where the first Mosasaurus was discovered in 1766. The Dutch-Belgian border area around the Limburg capital is one of the best-explored areas in the world where Cretaceous rocks are concerned, the era that came to an abrupt end 66 million years ago. New data can now be added to all previous knowledge: the Maastricht mosasaurs turned out to be quite picky in their choice of diet. This is the conclusion of researchers from Utrecht University and the Natural History Museum Maastricht. In collaboration with English colleagues from the University of Leicester, they were the first in the world to study the wear marks on mosasaur teeth.

    “We were curious whether different species of mosasaurs around Maastricht were really getting in each other’s way in their choice of food, or whether this was not so much of a problem,” explains Dr Femke Holwerda, palaeontologist at the Utrecht University Faculty of Geosciences. In the absence of data on stomach contents of the Maastricht monitor lizards, the researchers therefore looked at minute scratches on the teeth of these animals from southern Limburg (the Netherlands) and in the vicinity of Eben-Emael (province of Liège, Belgium).

    Seafood banquet

    “It seems that the various species of mosasaur reveal differences in diet. We noted these differences mainly between the smaller species – by mosasaur standards – of about three to seven metres in overall size, and the larger ones, eight to fifteen metres in length.” But there were also some differences between the larger species. “Prognathodon in particular, with its large cone-shaped teeth, appears to have had a surprising amount of shellfish in its diet, so it apparently loved its seafood buffet. Another species, Plioplatecarpus, with narrow pointed teeth, showed a striking number of signs of wear. Perhaps this species was also fond of fish with strongly scaled bodies.”

    First

    The researchers first made casts of the teeth in silicone rubber and put them in the 3D scanner. “This technique had already been used in dinosaurs, but we were the first to look at the teeth of mosasaurs in the same way,” explains fellow palaeontologist Anne Schulp, also affiliated with Utrecht University.

    Diversity

    With this research, some missing pieces of the puzzle from the long-gone latest Cretaceous world are found. “We wish to understand diversity better,” says Schulp. “And that is made easier for us because the animals studied all come from the same rocks, and therefore the same period. So instead of describing just one species, we look at the ecosystem as a whole.”

    Soft limestone

    The limestone deposits around Maastricht are a goldmine for palaeontologists. Schulp: “Nowhere else in the world is the habitat of mosasaurus as well preserved as here. You can find them in very soft limestone, so wear and tear of the teeth from other causes may be ruled out.”

    Attraction

    Of course, such an abundance of potential finds also exerts a great attraction on amateur palaeontologists. “There’s nothing wrong with that,” emphasises John Jagt, curator at the Natural History Museum Maastricht. “Amateur literally means ‘enthusiast’ and thanks to 250 years of intensive research by these enthusiasts, we have learnt a lot about mosasaurs and other extinct life forms. A museum like ours benefits greatly from this. What also helps is that this kind of amateur science is stimulated in the Netherlands: it is simply allowed by law. That’s not the case everywhere.”

    Article

    Femke M. Holwerda, Jordan Bestwick, Mark A. Purnell, John W.M. Jagt, Anne S. Schulp, ‘Three-dimensional dental microwear in type-Maastrichtian mosasaur teeth (Reptilia, Squamata)’, Scientific Reports, https://doi.org/10.1038/s41598-023-42369-7


     

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    Universiteit Utrecht, Faculteit Geowetenschappen

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  • Ancient sea monster discovery reveals oldest mega-predator

    Ancient sea monster discovery reveals oldest mega-predator

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    Newswise — The fossils were found 40 years ago in north-eastern France. An international team of palaeontologists from the Naturkunde-Museum Bielefeld in Germany, the Institute of Paleobiology of the Polish Academy of Sciences in Warsaw, Poland, the Natural History Museum in Luxembourg and The Museum of Evolution at Uppsala University in Sweden have now analysed them and identified them as a new pliosaur genus: Lorrainosaurus.

    Pliosaurs were a type of plesiosaur with short necks and massive skulls. They appeared over 200 million years ago, but remained minor components of marine ecosystems until suddenly developing into enormous apex predators. The new study shows that this adaptive shift followed feeding niche differentiation and the global decline of other predatory marine reptiles over 170 million years ago.

    Lorrainosaurus is the oldest large-bodied pliosaur represented by an associated skeleton. It had jaws over 1.3 m long with large conical teeth and a bulky ‘torpedo-shaped’ body propelled by four flipper-like limbs.

    “Lorrainosaurus was one of the first truly huge pliosaurs. It gave rise to a dynasty of marine reptile mega-predators that ruled the oceans for around 80 million years,” explains Sven Sachs, a researcher at the Naturkunde-Museum Bielefeld, who led the study.

    This giant reptile probably reached over 6 m from snout to tail, and lived during the early Middle Jurassic period. Intriguingly, very little is known about plesiosaurs from that time.

    “Our identification of Lorrainosaurus as one of the earliest mega-predatory pliosaurs demonstrates that these creatures emerged immediately after a landmark restructuring of marine predator ecosystems across the Early-to-Middle Jurassic boundary, some 175 to 171 million years ago. This event profoundly affected many marine reptile groups and brought mega-predatory pliosaurids to dominance over ‘fish-like’ ichthyosaurs, ancient marine crocodile relatives, and other large-bodied predatory plesiosaurs”, adds Daniel Madzia from the Institute of Paleobiology of the Polish Academy of Sciences, who co-led the study.

    Pliosaurs were some of the most successful marine predators of their time.

    “Famous examples, such as Pliosaurus and Kronosaurus – some of the world’s largest pliosaurs – were absolutely enormous with body-lengths exceeding 10 m. They were ecological equivalents of today’s Killer whales and would have eaten a range of prey including squid-like cephalopods, large fish and other marine reptiles. These have all been found as preserved gut contents”, said senior co-author Benjamin Kear, Curator of Vertebrate Palaeontology and Researcher in Palaeontology at The Museum of Evolution, Uppsala University.

    The recovered bones and teeth of Lorrainosaurus represent remnants of what was once a complete skeleton that decomposed and was dispersed across the ancient sea floor by currents and scavengers.

    “The remains were unearthed in 1983 from a road cutting near Metz in Lorraine, north-eastern France. Palaeontology enthusiasts from the Association minéralogique et paléontologique d’Hayange et des environs recognised the significance of their discovery and donated the fossils to the Natural History Museum in Luxembourg”, said co-author Ben Thuy, Curator at the Natural History Museum in Luxembourg.

    Other than a brief report published in 1994, the fossils of Lorrainosaurus remained obscure until this new study re-evaluated the finds. Lorrainosaurus indicates that the reign of gigantic mega-predatory pliosaurs must have commenced earlier than previously thought, and was locally responsive to major ecological changes affecting marine environments covering what is now western Europe during the early Middle Jurassic.

    “Lorrainosaurus is thus a critical addition to our knowledge of ancient marine reptiles from a time in the Age of Dinosaurs that has as yet been incompletely understood”, says Benjamin Kear.

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    Uppsala University

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  • Scientists Discover a New Phase of High-Density, Ultra-Hot Ice

    Scientists Discover a New Phase of High-Density, Ultra-Hot Ice

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    The Science

    Newswise — The outer planets of our solar system, like Uranus and Neptune, are water-rich gas giants. These planets have extreme pressures of 2 million times the Earth’s atmosphere. They also have interiors as hot as the surface of the Sun. Under these conditions, water exhibits exotic, high-density ice phases. Researchers recently observed one of these phases, called Ice XIX, for the first time using high-power lasers to reproduce the necessary extreme conditions. They measured the Ice XIX structure using the Matter at Extreme Conditions instrument at the Linac Coherent Light Source, a pioneering X-ray laser facility, to show that oxygen atoms pack in a body-centered cubic structure, while the hydrogen atoms move freely like a fluid, dramatically increasing conductivity.

    The Impact

    Voyager II, a NASA solar system exploration spacecraft launched in 1977, measured highly unusual magnetic fields around Uranus and Neptune. Scientists considered exotic states of so-called superionic ice as a possible explanation due to these states’ increased electrical conductivity. This work demonstrates the existence of the previously undiscovered Ice XIX phase. It shows that this phase could form at the right depths and help explain the Voyager II magnetic data.

    Summary

    Water–a compound that is ubiquitous in our solar system and necessary for life–exhibits an exceptionally complex pressure-temperature phase diagram with 18 crystalline ice phases already identified. Nowhere are dense ice phases more important than in the interiors of gas giants like Uranus and Neptune. Scientists hypothesize that these planets’ complex magnetic fields are produced by exotic high-pressure states of water ice with superionic properties. However, the structure of ice at these extreme conditions is notoriously challenging to measure.

    Using the Matter at Extreme Conditions instrument at the Linac Coherent Light Source, an ultrafast X-ray Free Electron Laser and a Department of Energy (DOE) Office of Science user facility, to probe the ice structure during laser-driven dynamic compression, researchers found the first direct evidence of a new phase of high-density, ultra-hot water ice. At 200 GPa (2 million atmospheres) and 5,000 K (8,500 degrees Fahrenheit) this new high-pressure ice phase, deemed Ice XIX, has a body-centered cubic (BCC) lattice structure. Though other structures have been theorized to be stable at these conditions, Ice XIX’s BCC structure would enable an increase in the electrical conductivity much deeper into the interiors of ice giants than previously thought. The results provide an important and compelling origin of the multi-polar magnetic fields as measured by the Voyager II spacecraft for Uranus and Neptune.

     

    Funding

    Funding for this research included the DOE National Nuclear Security Administration; the DOE Office of Science, Fusion Energy Science; the Laboratory Directed Research & Development program of Los Alamos National Laboratory; and the National Science Foundation. The experimental measurements were conducted at the Matter at Extreme Conditions instrument (operated by the DOE Office of Science, Fusion Energy Science program) of the Linac Coherent Light Source, a DOE Office of Science, Basic Energy Sciences user facility operated by SLAC National Accelerator Laboratory.


    Journal Link: Scientific Reports, Jan-2022

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    Department of Energy, Office of Science

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  • Climate change: Emperor penguin breeding fails due to Antarctic sea ice loss

    Climate change: Emperor penguin breeding fails due to Antarctic sea ice loss

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    Newswise — Four out of five emperor penguin colonies in the Bellingshausen Sea, Antarctica, saw no chicks survive to fledge successfully in the spring of 2022, reports a study published in Communications Earth & Environment. The study suggests that this complete breeding failure is a direct consequence of the unprecedented loss of sea ice recorded in the region in recent years due to climate change.

    Emperor penguin (Aptenodytes forsteri) colonies generally need stable ice attached to the land between April and January to ensure successful breeding and moulting. Any change in the extent of the Antarctic sea ice can affect their reproduction as chicks do not develop waterproof feathers until fledging.

    Peter Fretwell and colleagues used satellite images covering the period between 2018 and 2022 to monitor the presence of emperor penguins during the breeding season at five colonies in the Bellingshausen Sea in Antarctica. The colonies are known as Rothschild Island, Verdi Inlet, Smyley Island, Bryan Coast, and Pfrogner Point and range in size from around 630 pairs on Rothschild Island to around 3,500 pairs on Smyley Island.

    The authors found that four colonies — Verdi Inlet, Smyley Island, Bryant Coast, and Pfrogner Point —experienced total reproductive failure and were abandoned in the period after the sea ice broke up before the start of the fledging period in December 2022. The authors indicate that it is unlikely that any chicks survived to successfully fledge at these colonies. However, satellite images suggest that chicks did fledge successfully at Rothschild Island colony. The authors note that of the five colonies only Bryant Coast colony had been identified as having experienced total breeding failure prior to 2022.

    This is the first regional breeding failure of emperor penguins observed in the past 13 years in the region, and among the first evidence of the direct impact of Antarctic warming on the viability of emperor penguin populations.

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    Scientific Reports

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  • Prehistoric Women’s Use of Atlatl Weapons Balanced Division of Labor in Hunting

    Prehistoric Women’s Use of Atlatl Weapons Balanced Division of Labor in Hunting

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    Newswise — A new study led by Archaeologist Michelle Bebber, Ph.D., an assistant professor in Kent State University’s Department of Anthropology, has demonstrated that the atlatl (i.e. spear thrower) functions as an “equalizer”, a finding which supports women’s potential active role as prehistoric hunters.

    Bebber co-authored an article “Atlatl use equalizes female and male projectile weapon velocity” which was published in the journal Nature: Scientific Reports. Her co-authors include Metin I. Eren and Dexter Zirkle (a recent Ph.D. graduate) also in the Department of Anthropology at Kent State, Briggs Buchanan of University of Tulsa, and Robert Walker of the University of Missouri.

    The atlatl is a handheld, rod-shaped device that employs leverage to launch a dart, and represents a major human technological innovation used in hunting and warfare since the Stone Age. The first javelins are at least hundreds of thousands of years old; the first atlatls are likely at least tens of thousands of years old.

    “One hypothesis for forager atlatl adoption over its presumed predecessor, the thrown javelin, is that a diverse array of people could achieve equal performance results, thereby facilitating inclusive participation of more people in hunting activities,” Bebber said.

    Bebber’s study tested this hypothesis via a systematic assessment of 2,160 weapon launch events by 108 people, all novices, (many of which were Kent State students) who used both javelins and atlatls. The results are consistent with the “atlatl equalizer hypothesis”, showing that the atlatl not only increases the velocity of projectile weapons relative to thrown javelins, but that the atlatl equalizes the velocity of female- and male-launched projectiles.

    “This result indicates that a javelin to atlatl transition would have promoted a unification, rather than division, of labor,” Bebber said. “Our results suggest that female and male interments with atlatl weaponry should be interpreted similarly, and in some archaeological contexts females could have been the atlatl’s inventor.”

    “Many people tend to view women in the past as passive and that only males were hunters, but increasingly that does not seem to be the case,” Bebber said. “Indeed, and perhaps most importantly, there seems to be a growing consilience among different fields – archaeology, ethnography, and now modern experiments – that women were likely active and successful hunters of game, big and small.”

    Since 2019, every semester Bebber takes her class outside to use the atlatl. She noticed that females picked it up very easily and could launch darts as far as the males with little effort.

    “Often males became frustrated because they were trying too hard and attempting to use their strength to launch the darts,” Bebber said. “However, since the atlatl functions as a simple lever, it reduces the advantage of male’s generally greater muscle strength”.

    “Given that females appear to benefit the most from atlatl use, it is certainly within the realm of possibility that in some contexts females invented the atlatl,” Bebber said. “Likewise, in some primate species, females invent tool technologies for hunting as documented amongst the Fongoli chimpanzees.”

    To learn more about the Experimental Archaeology Lab at Kent State, visit: https://www.kent.edu/anthropology/experimental-archaeology-laboratory

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    Kent State University

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  • Thanks to Trapped Electrons, a Material Expected to be a Conducting Metal Remains an Insulator

    Thanks to Trapped Electrons, a Material Expected to be a Conducting Metal Remains an Insulator

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    The Science

    New research sheds light on the mechanism behind how a special material changes from an electrically conducting metal to an electric insulator. The researchers studied lanthanum strontium nickel oxide (La1.67Sr0.33NiO4) derived from a quantum material La2NiO4. Quantum materials have unusual properties that result from how their electrons interact. Below a critical temperature, the strontium doped material is an insulator. This is due to the separation of introduced holes from the magnetic regions, forming “stripes.” As the temperature increases, these stripes fluctuate and melt at 240K. At this temperature, researchers expected the material to become a conducting metal. Instead, it remains an insulating material. Neutron scattering sheds light on this intriguing phenomenon. The results indicate that the material stays an insulator because of certain atomic vibrations that trap electrons and thus impede electrical conduction.

    The Impact

    Quantum materials have properties that aren’t predicted by the parts that make up those materials. For example, they can transition from metals to insulators or act as superconductors. They hold tremendous promise for applications in science and technology. This research describes the tunability of electron-phonon interaction on the metal-insulator transition in one quantum material. The results will help validate theoretical models of materials that have strongly interacting electrons. These theories will help scientists design new quantum materials for future technologies.

    Summary

    In metals, electrons can be considered as free particles flying along trajectories enforced by the crystal structure. In recent decades, scientists discovered new materials where electrons strongly repel each other and bounce off atomic vibrations in the host crystal. These materials exhibit unusual and technologically useful properties. These properties can include dramatic electrical resistance drop in magnetic fields, electron conduction only on the surface, and high temperature superconductivity. Understanding these properties in different materials remains a grand challenge for the scientific community.

    This work used high intensity neutron beams at the Spallation Neutron Source, a Department of Energy user facility at Oak Ridge National Laboratory (ORNL), to look deep inside an archetype quantum material La2NiO4 in which one sixth of the lanthanum (La) atoms are replaced with strontium (Sr) atoms (La1.67Sr0.33NiO4). The team included researchers from the University of Colorado Boulder, ORNL, Brookhaven National Laboratory, and the RIKEN Center for Emergent Matter Science in Japan. These materials are insulating at low temperatures due to the so-called “stripe” order that results from the complex interplay between electronic spins and the holes introduced due to strontium doping. The doped material is expected to become metallic above 240K when the stripes melt. However, the material remains insulating. The collaboration uncovered strong friction between the holes and certain vibrations of oxygen ions and found evidence for this interaction in other materials of similar structure. The microscopic mechanism could pave way for the design of new materials with unusual properties useful for various quantum technologies.

     

    Funding

    Work at the University of Colorado Boulder was supported by the Department of Energy Office of Science, Basic Energy Sciences program. One of the researchers was supported by a Japan Science and Technology Agency CREST Grant. Work at Brookhaven National Laboratory was supported by the Department of Energy Office of Science, Basic Energy Sciences program.


    Journal Link: Scientific Reports, Jul-2020

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    Department of Energy, Office of Science

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  • Earliest Levantine wind instruments found

    Earliest Levantine wind instruments found

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    Newswise — Although the prehistoric site of Eynan-Mallaha in northern Israel has been thoroughly examined since 1955, it still holds some surprises for scientists. Seven prehistoric wind instruments known as flutes, recently identified by a Franco-Israeli team1, are the subject of an article published on 9 June in Nature Scientific Reports. The discovery of these 12,000 -year-old aerophones is extremely rare – in fact, they are the first to be discovered in the Near East. The “flutes”, made from the bones of a small waterfowl, produce a sound similar to certain birds of prey (Eurasian sparrowhawk and common kestrel) when air is blown into them. The choice of bones used to make these instruments was no accident – larger birds, with bigger bones that produce deeper sounds, have also been found at the site. The Natufians, the Near Eastern civilisation that occupied this village between 13,000 and 9,700 BC, deliberately selected smaller bones in order to obtain the high-pitched sound needed to imitate these particular raptors. The instruments may have been used for hunting, music or to communicate with the birds themselves. Indeed, it is clear that the Natufians attributed birds with a special symbolic value, as attested by the many ornaments made of talons found at Eynan-Mallaha. The village, located on the shores of Lake Hula, was home to this civilisation throughout its 3,000 years of existence. It is therefore of vital importance in revealing the practices and habits of a culture at the crossroads between mobile and sedentary lifestyles, and the transition from a predatory economy to agriculture. This work2 was supported by the Fyssen Fondation and the ministère des Affaires étrangères.

     

    Notes


    1. The team is co-directed by Laurent Davin (post-doctoral researcher at the Fyssen Fondation) and José-Miguel Tejero (University of Vienna, University of Barcelona) and includes scientists from the Centre de recherche français à Jérusalem (CNRS/Aix-Marseille Université/ministère de la Culture), the laboratoire Technologie et ethnologie des mondes préhistoriques (CNRS/Université Panthéon-Sorbonne/Université Paris Nanterre), The Hebrew University of Jerusalem (Institute of Archaeology), Israel Antiquities Authority, Virginia Commonwealth University (Department of Forensic Science), École Nationale Vétérinaire (Laboratoire d’Anatomie comparée, Nantes), the laboratoire Archéologies et sciences de l’Antiquité (CNRS/ministère de la Culture/Université Panthéon-Sorbonne/Université Paris Nanterre) and the l’Institut d’ethnologie méditerranéenne, européenne et comparative (CNRS/Université Aix-Marseille).
    2. Excavation of the Eynan-Mallaha site is still ongoing, under the direction of CNRS researcher Fanny Bocquentin and Israel Antiquities Authority researcher Lior Weisbrod.

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    CNRS (Centre National de Recherche Scientifique / National Center of Scientific Research)

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  • Engineering: Diapers to Houses

    Engineering: Diapers to Houses

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    Newswise — Up to eight percent of the sand in concrete and mortar used to make a single-story house could be replaced with shredded used disposable diapers without significantly diminishing their strength, according to a study published in Scientific Reports. The authors suggest that disposable diaper waste could be used as a construction material for low-cost housing in low- and middle-income countries.

    Disposable diapers are usually manufactured from wood pulp, cotton, viscose rayon, and plastics such as polyester, polyethylene, and polypropylene. The majority are disposed of in landfill or by incineration.

    Siswanti Zuraida and colleagues prepared concrete and mortar samples by combining washed, dried, and shredded disposable diaper waste with cement, sand, gravel, and water. These samples were then cured for 28 days. The authors tested six samples containing different proportions of diaper waste to measure how much pressure they could withstand without breaking. They then calculated the maximum proportion of sand that could be replaced with disposable diapers in a range of building materials that would be needed to construct a house with a floorplan area of 36 square metres that complies with Indonesian building standards.

    The authors found that disposable diaper waste could replace up to ten percent of the sand needed for concrete used to form columns and beams in a three-story house. This proportion increased to 27 percent of sand needed for concrete columns and beams in a single-story house. Up to 40 percent of the sand needed for mortar in partition walls can be replaced with disposable diapers, compared to nine percent of the sand in mortar for floors and garden paving. Together, up to eight percent of the sand in all of the concrete and mortar building materials required to build a single-story house with a floorplan of 36 square metres can be replaced with disposable diaper waste — equivalent to 1.7 cubic metres of waste.

    The authors note that wider implementation of their findings would require the involvement of stakeholders in government and waste treatment in developing processes for the large-scale collection, sanitising, and shredding of diaper waste. Additionally, building regulations would need to be modified to allow the use of diaper waste as a construction material.

    ###

    Article details

    Application of non-degradable waste as building material for low-cost housing

    DOI: 10.1038/s41598-023-32981-y

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    Scientific Reports

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  • Midwives and doctors have better emotional stability.

    Midwives and doctors have better emotional stability.

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    Newswise — Swedish obstetricians and gynecologists are noticeably more emotionally stable and conscientious compared to the majority of the Swedish population. Based on the doctors’ personalities, their decision-making styles differ in emergency situations. The research study from Lund University is now published in Scientific Reports.

    Personality is usually summarized in five traits – the so-called “big five”: Emotional stability (neuroticism), extroversion, agreeableness, conscientiousness, and openness. Our personality then shapes our decision-making style. In a research study from Lund University, Swedish obstetricians’ and gynecologists’ personality profiles and clinical experience are linked for the first time to their decision-making styles in acute childbirth situations.

    ”Obstetricians and gynecologists have a personality profile that differs significantly from the population at large. On average, 85 percent of Sweden’s population has significantly lower emotional stability, extroversion, agreeableness, and conscientiousness than the obstetricians in our study. It’s hard not to be surprised when the differences are so clear”, says Petri Kajonius, associate professor of personality psychology and behavioral measurement at Lund University.

    It is our personality that defines what we will enjoy in our professional life, and the consequence is likely a self-selection of people who seek a certain profession. Swedish obstetric-focused physicians’ personalities make them comfortable in an environment where a childbirth situation can quickly shift to something acute and potentially escalate into a crisis. Here, traits such as emotional stability and conscientiousness are prominent:

    ”Neuroticism is the opposite of emotional stability and is characterized by anxiety and vulnerability to stress. Someone with high neuroticism may have a harder time handling stress in acute situations, but a small amount of it can increase the inclination to collaborate and make decisions together with others, which can be advantageous”, says Gabriel Raoust, doctoral student at Lund University and consultant in obstetrics and gynecology at Ystad Lasarett, Sweden.

    It has been previously established that women exhibit greater levels of neuroticism than men, which coincides with the fact that they are often more inclined to cooperate and less prone to taking risks. The study also showed that the more clinically experienced doctors are – especially men – the more comfortable they are taking the lead and making individual decisions. Traits like agreeableness combined with conscientiousness are beneficial in situations where one must follow checklists and procedures while interacting with others on the team.

    “To increase understanding of decision-making processes and the factors that influence doctors’ behavior, it is important to realize that it is normal that there are different personalities. An individual-centered or team-based approach depends on the person’s “big five” personality and can be surprisingly relevant even in a highly organized and protocol-driven environment like acute obstetrics”, concludes Gabriel Raoust.

    https://www.nature.com/articles/s41598-023-32658-6

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    Lund University

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  • Genetic code of hornets sequenced to understand their successful invasion

    Genetic code of hornets sequenced to understand their successful invasion

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    Newswise — The genomes of two hornet species, the European hornet and the Asian hornet (or yellow-legged hornet) have been sequenced for the first time by a team led by UCL (University College London) scientists.

    By comparing these decoded genomes with that of the giant northern hornet, which has recently been sequenced by another team, the researchers have revealed clues suggesting why hornets have been so successful as invasive species across the globe.

    Hornets are the largest of the social wasps; they play important ecological roles as top predators of other insects. In their native regions, they are natural pest controllers, helping regulate the populations of insects such as flies, beetles, caterpillars and other types of wasps. These services are critical for healthy, functional ecosystems, as well as for agriculture.

    But hornets also tend to be very successful as invasive species. They can become established in areas they are not native to and cause potentially huge ecological and economic damage by hunting important pollinators, such as honeybees, wild bees and hoverflies.

    To better understand how these species have so successfully expanded their ranges, the international team of scientists investigated the genomes of three types of hornets.

    A genome sequence is the set of instructions – a genetic code – that makes a species. Comparing the genomes of different species can give insights into their biology – their behaviour, evolution, and how they interact with the environment.

    The researchers have newly sequenced the genomes of the native European hornet, Vespa crabro – an important top predator, which is protected in parts of Europe – and the invasive yellow-legged Asian hornet Vespa velutina, which has become established through much of Europe over the last 20 years threatening native ecosystems, and has occasionally been sighted in the UK. They compared these with the genome of the giant northern hornet, Vespa mandarinia – a species known for its role as pest controller, pollinator and food provider in its native Asian range, but is a recent arrival in North America, where it may threaten native fauna.

    By analysing differences between the three related species, the researchers were able to identify genes that have been rapidly evolving since the species differentiated themselves from other wasps and from one another, and found some noteworthy genes that are rapidly evolving, particularly relating to communication and olfaction (smell).

    The study’s first author, Dr Emeline Favreau (UCL Centre for Biodiversity & Environment), said: “We were excited to find evidence of rapid genome evolution in these hornet genomes, compared to other social insects. Lots of genes have been duplicated or mutated; these included genes that are likely to be involved in communication and in sensing the environment.”

    Genome evolution allows organisms to adapt to their environment and make the most of their surroundings by developing new behaviours and physiology.

    Co-author Dr Alessandro Cini, who began the work at UCL before moving to the University of Pisa, said: “These findings are exciting, as they may help explain why hornets have been so successful in establishing new populations in non-native regions.

    “Hornets are carried to different parts of the world accidentally by humans. All that is needed is a small number of mated queens to be transported, hidden in cargo perhaps. The genomes suggest that hornets have lots of genes involved in detecting and responding to chemical cues – these may make them especially good at adapting to hunt different types of prey in non-native regions.”

    Senior author Professor Seirian Sumner (UCL Centre for Biodiversity & Environment) said: “These hornet genomes are just the beginning. The genomes of more than 3,000 insect species have now been sequenced by efforts around the world, but wasps are under-represented among these.

    “Genomes tell us about aspects of the ecology and evolution that other methods cannot. Evolution has equipped these insects with an incredible genetic toolbox with which to exploit their environment and hunt their prey.”

    Armed with these new genomes, the scientists hope to help improve the management of hornet populations, both for their ecosystem services as pest controllers in native zones, and as ecological threats in regions where they are invasive.

    The study involved researchers in the UK, Italy, Spain, Israel, France, New Zealand, and Austria, and was primarily funded by the Natural Environment Research Council.

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    University College London

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  • Unveiling the secrets of sealed animal coffins in ancient Egypt

    Unveiling the secrets of sealed animal coffins in ancient Egypt

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    Newswise — The contents of six sealed ancient Egyptian animal coffins — which were imaged using a non-invasive technique — are described in a study published in Scientific Reports.

    The mummification of animals was a widespread practice in ancient Egypt and previous research has suggested that some mummified animals were believed to be physical incarnations of deities, while others may have represented offerings to deities or have been used in ritual performances.

    Daniel O’Flynn and colleagues imaged the contents of six sealed animal coffins using neutron tomography — a technique that creates images of objects based on the extent to which neutrons emitted by a source can pass through them — after previous attempts to study the coffins with x-rays were unsuccessful. All six of the coffins are made of copper compounds. The authors note that it is rare for such coffins to still be sealed. Three of the coffins, topped with lizard and eel figures as well as loops, have been dated to between 500 and 300 BCE and were discovered in the ancient city of Naukratis. A fourth coffin, topped by a lizard figure, has been dated to between 664 and 332 BCE and was discovered in the ancient city of Tell el-Yehudiyeh. The two other coffins, topped with part-eel, part-cobra figures with human heads, have been dated to between approximately 650 and 250 BCE and are of unknown origin.

    The authors identified bones in three of the coffins, including an intact skull with dimensions similar to those of a group of wall lizards containing species that are endemic to North Africa, as well as evidence of broken-down bones in a further two coffins. They also identified textile fragments within three coffins that were possibly made from linen, which was commonly used in Ancient Egyptian mummification. They propose that linen may have been wrapped around the animals before they were placed in the coffins. The authors found lead within the three coffins without loops, which they suggest may have been used to aid weight distribution within two of them and to repair a hole found in the other. They speculate that lead may have been selected due to its status in ancient Egypt as a magical material, as previous research has proposed that lead was used in love charms and curses. The authors did not identify additional lead within the three coffins topped with loops. They suggest that the loops may have been used to suspend these lighter coffins from shrine or temple walls or from statues or boats used during religious processions, while the heavier lead-containing coffins without loops may have been used for different purposes.

    The findings provide further insight into the manufacture and use of animal coffins in ancient Egypt.

    ###

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    Scientific Reports

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  • Is Deep Learning a necessary ingredient for Artificial Intelligence?

    Is Deep Learning a necessary ingredient for Artificial Intelligence?

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    Newswise — The earliest artificial neural network, the Perceptron, was introduced approximately 65 years ago and consisted of just one layer.  However, to address solutions for more complex classification tasks, more advanced neural network architectures consisting of numerous feedforward (consecutive) layers were later introduced. This is the essential component of the current implementation of deep learning algorithms. It improves the performance of analytical and physical tasks without human intervention, and lies behind everyday automation products such as the emerging technologies for self-driving cars and autonomous chat bots.

    The key question driving new research published today in Scientific Reports is whether efficient learning of non-trivial classification tasks can be achieved using brain-inspired shallow feedforward networks, while potentially requiring less computational complexity. “A positive answer questions the need for deep learning architectures, and might direct the development of unique hardware for the efficient and fast implementation of shallow learning,” said Prof. Ido Kanter, of Bar-Ilan’s Department of Physics and Gonda (Goldschmied) Multidisciplinary Brain Research Center, who led the research. “Additionally, it would demonstrate how brain-inspired shallow learning has advanced computational capability with reduced complexity and energy consumption.”

    “We’ve shown that efficient learning on an artificial shallow architecture can achieve the same classification success rates that previously were achieved by deep learning architectures consisting of many layers and filters, but with less computational complexity,” said Yarden Tzach, a PhD student and contributor to this work.  “However, the efficient realization of shallow architectures requires a shift in the properties of advanced GPU technology, and future dedicated hardware developments,” he added.

    The efficient learning on brain-inspired shallow architectures goes hand in hand with efficient dendritic tree learning which is based on previous experimental research by Prof. Kanter on sub-dendritic adaptation using neuronal cultures, together with other anisotropic properties of neurons, like different spike waveformsrefractory periods and maximal transmission rates (see also a video on dendritic learning: https://vimeo.com/702894966 ).

    For years brain dynamics and machine learning development were researched independently, however recently brain dynamics has been revealed as a source for new types of efficient artificial intelligence.

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    Bar-Ilan University

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  • Scientists use tardigrade proteins for human health breakthrough

    Scientists use tardigrade proteins for human health breakthrough

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    Newswise — University of Wyoming researchers’ study of how microscopic creatures called tardigrades survive extreme conditions has led to a major breakthrough that could eventually make life-saving treatments available to people where refrigeration isn’t possible.

    Thomas Boothby, an assistant professor of molecular biology, and colleagues have shown that natural and engineered versions of tardigrade proteins can be used to stabilize an important pharmaceutical used to treat people with hemophilia and other conditions without the need for refrigeration — even amid high temperatures and other difficult conditions. The findings are detailed today (Monday) in Scientific Reports, an online, open access journal from the publishers of Nature.

    The pharmaceutical, human blood clotting Factor VIII, is an essential therapeutic used to treat genetic disease and instances of extreme bleeding. Despite being critical and effective in treating patients in these circumstances, Factor VIII has a serious shortcoming, in that it is inherently unstable. Without stabilization within a precise temperature range, Factor VIII will break down.

    “In underdeveloped regions, during natural disasters, during space flight or on the battlefield, access to refrigerators and freezers, as well as ample electricity to run this infrastructure, can be in short supply. This often means that people who need access to Factor VIII do not get it,” Boothby says. “Our work provides a proof of principle that we can stabilize Factor VIII, and likely many other pharmaceuticals, in a stable, dry state at room or even elevated temperatures using proteins from tardigrades — and, thus, provide critical live-saving medicine to everyone everywhere.”

    Measuring less than half a millimeter long, tardigrades — also known as water bears — can survive being completely dried out; being frozen to just above absolute zero (about minus 458 degrees Fahrenheit, when all molecular motion stops); heated to more than 300 degrees Fahrenheit; irradiated several thousand times beyond what a human could withstand; and even survive the vacuum of outer space. They are able to do so, in part, by manufacturing a sugar called trehalose and a protein called CAHS D.

    According to the research paper, Boothby and his colleagues fine-tuned the biophysical properties of both trehalose and CAHS D to stabilize Factor VIII, noting that CAHS D is most suitable for the treatment. The stabilization allows Factor VIII to be available in austere conditions without refrigeration, including repeated dehydration/rehydration, extreme heat and long-term dry storage.

    The researchers believe the same thing can be done with other biologics — pharmaceuticals containing or derived from living organisms — such as vaccines, antibodies, stem cells, blood and blood products.

    “This study shows that dry preservation methods can be effective in protecting biologics, offering a convenient, logistically simple and economically viable means of stabilizing life-saving medicines,” Boothby says. “This will be beneficial not only for global health initiatives in remote or developing parts of the world, but also for fostering a safe and productive space economy, which will be reliant on new technologies that break our dependence on refrigeration for the storage of medicine, food and other biomolecules.”

    Boothby and other researchers hope that their discoveries can be applied to address other societal and global health issues as well, including water scarcity. For example, their work might lead to better ways of generating engineered crops that can cope with harsh environments.

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    University of Wyoming

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  • New pumping strategy could slash energy costs of fluid transport by 22%

    New pumping strategy could slash energy costs of fluid transport by 22%

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    Newswise — A collaboration between the Okinawa Institute of Science and Technology (OIST) and the Polytechnic University of Milan has found that when a fluid is pumped through a pipe in an intermittent way, the cost of transport is significantly reduced. 

    In their proof-of-concept study, published recently in Scientific Reports, the researchers used numerical simulations to show that when they periodically switched a pump on and off, the fluid flow kept transitioning between a turbulent and laminar state. This reduced energy costs by up to 22% – a figure which the researchers say can be further optimized.

    Laminar flows, like the kind you see when you slowly crack a tap open, are smooth, streamlined and energy efficient. Turbulent flows, on the other hand, such as those when a tap runs full blast, are chaotic and waste energy.  

    “If you inject ink into a laminar flow, you’ll see a clear line of ink moving down the pipe, but with a turbulent flow, the ink diffuses as each fluid particle takes an unpredictable path. This chaotic motion at the small scales results in a lot of energy being lost,” explained Giulio Foggi Rota, first author and current PhD student in the Complex Fluids and Flows Unit. “Laminar flows are ideal for fluid transport, but when viscous fluids move fast and over large scales, the system naturally evolves towards a turbulent state.” 

    Reducing turbulence, and therefore the costs of moving fluids through pipes could bring numerous economic and environmental benefits. The transport of fluids makes up a significant part of the final cost of fuel, so liquid hydrogen could become cheaper for developed countries to transition to. For developing countries that are not yet able to make the switch to green energy, oil and natural gas could become a more affordable energy alternative to firewood, the use of which contributes to deforestation and produces more harmful pollutants than fossil fuels. 

    In the study, the researchers created a code that, when run on a powerful supercomputer, was able to simulate a standardized turbulent flow. 

    The scientists ran different scenarios, changing the duration of time that the pump was switched on, the intensity of the pump (how fast it accelerated the fluid), and the overall length of time for each on-off pump cycle. 

    They found that long cycles characterized by a short, intense pump that quickly accelerated the fluid flow, and then a long phase where the pump was switched off and the fluid slowed down, worked best for keeping the fluid in a laminar-like state for the longest amount of time. 

    For the next step, the researchers want to try to better understand the physics underlying the repeated transition between the turbulent and laminar-like states. 

    “If we can gain a fuller understanding of why the fluid behaves like it does due to unsteady pumping, then we will be much closer to working out what is the optimal pumping strategy for saving the most amount of energy,” said Professor Marco Edoardo Rosti, who leads the OIST Complex Fluids and Flows Unit. 

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    Okinawa Institute of Science and Technology Graduate University – OIST

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  • New discovery to bulk up gluten-free fibre supplement

    New discovery to bulk up gluten-free fibre supplement

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    Newswise — Scientists have for the first time constructed the reference genome for the source of the popular fibre supplement, psyllium husk, which could boost supplies of the versatile plant-derived product.

    University of Adelaide experts conducted research on psyllium, also known as Plantago ovata.

    We extracted and sequenced the deoxyribonucleic acid (DNA) from leaf tissue to construct the chromosome-level reference genome for Plantago ovata and used ribonucleic acid (RNA) from other parts of the plant to predict the function of its genes,” said the University of Adelaide’s Professor Rachel Burton, a researcher from the School of Agriculture, Food and Wine.

    “This is a significant development because it will pave the way for improvements to the quality and quantity of psyllium crops.”

    DNA is the molecule that contains genetic information needed for the development and functioning of an organism while RNA acts as a messenger, carrying instructions from DNA to build proteins.

    This finding has been published in the journal Scientific Reports and is the result of a decade-long investigation by University of Adelaide researchers into the genetic makeup of the plant.

    Psyllium has been used for food and medicinal purposes for thousands of years.

    The seeds of the plant are milled to produce a soluble fibre used in pharmaceuticals and supplements to improve gut health and control blood cholesterol.

    Psyllium is also a common ingredient in gluten-free food. The seeds and their husks are naturally gluten-free and when mixed with water, produce a sticky substance that replicates some of the functions of gluten in bread.

    “This is a significant development because it will pave the way for improvements to the quality and quantity of psyllium crops.”The University of Adelaide’s Professor Rachel Burton, a researcher from the School of Agriculture, Food and Wine.

    This quality makes psyllium an essential ingredient in gluten-free bread and it can be used in a whole range of other baked goods. With the market size of gluten-free foods expected to reach USD$8.3 billion in 2025, demand for psyllium is predicted to increase.

    The plant is highly susceptible to changes in environmental conditions and diseases which not only affects the yield, but also the price and quality of this valuable commodity.

    “To date, efforts to improve the quality and quantity of psyllium husk have been hampered by the lack of a reference genome,” said the University of Adelaide’s Dr James Cowley, who is also from the School of Agriculture, Food and Wine and co-authored this study.

    “The development of a high-quality Plantago ovata reference genome will not only help to boost breeding programs but will also support lab-based experiments to better understand how carbohydrates in plants are constructed so we can tailor them for food and pharmaceutical uses.”

    First author Dr Lina Herliana conducted this research while pursuing her PhD at the University of Adelaide’s Waite Campus.

    “We predict the availability of this reference genome will lead to the development of new cultivars with higher yields that are more adaptable to environmental conditions. This will stabilise the production of psyllium products and seed or husk prices,” said Dr Herliana.

    The long-term project to understand the fundamental biology of psyllium was supported by an Australian Research Council Centre of Excellence and Linkage Project.

    It is expected that this discovery will accelerate further research into genetic improvement and breeding of psyllium.

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    University of Adelaide

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  • Extracts from two wild plants inhibit COVID-19 virus, study finds

    Extracts from two wild plants inhibit COVID-19 virus, study finds

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    Newswise — Two common wild plants contain extracts that inhibit the ability of the virus that causes COVID-19 to infect living cells, an Emory University study finds. Scientific Reports published the results — the first major screening of botanical extracts to search for potency against the SARS-CoV-2 virus.

    In laboratory dish tests, extracts from the flowers of tall goldenrod (Solidago altissima) and the rhizomes of the eagle fern (Pteridium aquilinum) each blocked SARS-CoV-2 from entering human cells.

    The active compounds are only present in miniscule quantities in the plants. It would be ineffective, and potentially dangerous, for people to attempt to treat themselves with them, the researchers stress. In fact, the eagle fern is known to be toxic, they warn.

    “It’s very early in the process, but we’re working to identify, isolate and scale up the molecules from the extracts that showed activity against the virus,” says Cassandra Quave, senior author of the study and associate professor in Emory School of Medicine’s Department of Dermatology and the Center for the Study of Human Health. “Once we have isolated the active ingredients, we plan to further test for their safety and for their long-range potential as medicines against COVID-19.”

    Quave is an ethnobotanist, studying how traditional people have used plants for medicine to identify promising new candidates for modern-day drugs. Her lab curates the Quave Natural Product Library, which contains thousands of botanical and fungal natural products extracted from plants collected at sites around the world.

    Caitlin Risener, a PhD candidate in Emory’s Molecular and Systems Pharmacology graduate program and the Center for the Study of Human Health, is first author of the current paper.

    In previous research to identify potential molecules for the treatment of drug-resistant bacterial infections, the Quave lab focused on plants that traditional people had used to treat skin inflammation.

    Given that COVID-19 is a newly emerged disease, the researchers took a broader approach. They devised a method to rapidly test more than 1,800 extracts and 18 compounds from the Quave Natural Product Library for activity against SARS-CoV-2.

    “We’ve shown that our natural products library is a powerful tool to help search for potential therapeutics for an emerging disease,” Risener says. “Other researchers can adapt our screening method to search for other novel compounds within plants and fungi that may lead to new drugs to treat a range of pathogens.”

    SARS-CoV-2 is an RNA virus with a spike protein that can bind to a protein called ACE2 on host cells. “The viral spike protein uses the ACE2 protein almost like a key going into a lock, enabling the virus to break into a cell and infect it,” Quave explains.

    The researchers devised experiments with virus-like particles, or VLPs, of SARS-CoV-2, and cells programmed to overexpress ACE2 on their surface. The VLPs were stripped of the genetic information needed to cause a COVID-19 infection. Instead, if a VLP managed to bind to an ACE2 protein and enter a cell, it was programmed to hijack the cell’s machinery to activate a fluorescent green protein.

    A plant extract was added to the cells in a petri dish before introducing the viral particles. By shining a fluorescent light on the dish, they could quickly determine whether the viral particles had managed to enter the cells and activate the green protein.   

    The researchers identified a handful of hits for extracts that protected against viral entry and then homed in on the ones showing the strongest activity: Tall goldenrod and eagle fern. Both plant species are native to North America and are known for traditional medicinal uses by Native Americans.

    Additional experiments showed that the protective power of the plant extracts worked across four variants of SARS-CoV-2: Alpha, theta, delta and gamma.

    To further test these results, the Quave lab collaborated with co-author Raymond Schinazi, Emory professor of pediatrics, director of Emory’s Division of Laboratory of Biochemical Pharmacology and co-director of the HIV Cure Scientific Working Group within the NIH-sponsored Emory University Center for AIDS Research. A world leader in antiviral development, Schinazi is best known for his pioneering work on breakthrough HIV drugs.

    The higher biosecurity rating of the Schinazi lab enabled the researchers to test the two plant extracts in experiments using infectious SARS-CoV-2 virus instead of VLPs. The results confirmed the ability of the tall goldenrod and eagle fern extracts to inhibit the ability of SARS-CoV-2 to bind to a living cell and infect it.

    “Our results set the stage for the future use of natural product libraries to find new tools or therapies against infectious diseases,” Quave says.

    As a next step, the researchers are working to determine the exact mechanism that enables the two plant extracts to block binding to ACE2 proteins.

    For Risener, one of the best parts about the project is that she collected samples of tall goldenrod and eagle fern herself. In addition to gathering medicinal plants from around the globe, the Quave lab also makes field trips to the forests of the Joseph W. Jones Research Center in South Georgia. The Woodruff Foundation established the center to help conserve one of the last remnants of the unique longleaf pine ecosystem that once dominated the southeastern United States.

    “It’s awesome to go into nature to identify and dig up plants,” Risener says. “That’s something that few graduate students in pharmacology get to do. I’ll be covered in dirt from head to toe, kneeling on the ground and beaming with excitement and happiness.”

    She also assists in preparing the plant extracts and mounting the specimens for the Emory Herbarium.

    “When you collect a specimen yourself, and dry and preserve the samples, you get a personal connection,” she says. “It’s different from someone just handing you a vial of plant material in a lab and saying, ‘Analyze this.’”

    After graduating, Risener hopes for a career in outreach and education for science policy surrounding research into natural compounds. A few of the more famous medicines derived from botanicals include aspirin (from the willow tree), penicillin (from fungi) and the cancer therapy Taxol (from the yew tree).

    “Plants have such chemical complexity that humans probably couldn’t dream up all the botanical compounds that are waiting to be discovered,” Risener says. “The vast medicinal potential of plants highlights the importance of preserving ecosystems.”

    Co-authors of the current paper include: Sumin Woo, Tharanga Samarakoon, Marco Caputo and Emily Edwards (the Quave lab and Emory’s Center for the Study of Human Health); Keivan Zandi, Shu Ling Goh and Jessica Downs-Bowen (the Schinazi lab); Kier Klepzig (Joseph W. Jones Research Center); and Wendy Applequist (Missouri Botanical Garden).

    Funding for the paper was provided by the Marcus Foundation, the NIH-funded Center for AIDS Research and the NIH National Center for Complementary and Integrative Health.

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    Emory University

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  • New Bacterial Therapy Approach to Treat Lung Cancer

    New Bacterial Therapy Approach to Treat Lung Cancer

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    Newswise — New York, NY—December 23, 2022—Lung cancer is the deadliest cancer in the United States and around the world. Many of the currently available therapies have been ineffective, leaving patients with very few options. A promising new strategy to treat cancer has been bacterial therapy, but while this treatment modality has quickly progressed from laboratory experiments to clinical trials in the last five years, the most effective treatment for certain types of cancers may be in combination with other drugs. 

    Columbia Engineering researchers report that they have developed a preclinical evaluation pipeline for characterization of bacterial therapies in lung cancer models. Their new study, published December 13, 2022, by Scientific Reports, combines bacterial therapies with other modalities of treatment to improve treatment efficacy without any additional toxicity. This new approach was able to rapidly characterize bacterial therapies and successfully integrate them with current targeted therapies for lung cancer.

    “We envision a fast and selective expansion of our pipeline to improve treatment efficacy and safety for solid tumors,” said first author Dhruba Deb, an associate research scientist who studies the effect of bacterial toxins on lung cancer in Professor Tal Danino’s lab in Biomedical Engineering, “As someone who has lost loved ones to cancer, I would like to see this strategy move from the bench to bedside in the future.”

    The team used RNA sequencing to discover how cancer cells were responding to bacteria at the cellular and molecular levels. They built a hypothesis on which molecular pathways of cancer cells were helping the cells to be resistant to the bacteria therapy. To test their hypothesis, the researchers blocked these pathways with current cancer drugs and showed that combining the drugs with bacterial toxins is more effective in eliminating lung cancer cells. They validated the combination of bacteria therapy with an AKT-inhibitor as an example in mouse models of lung cancer.

    “This new study describes an exciting drug development pipeline that has been previously unexplored in lung cancer – the use of toxins derived from bacteria,” said Upal Basu Roy, executive director of research, LUNGevity Foundation, USA. “The preclinical data presented in the manuscript provides a strong rationale for continued research in this area, thereby opening up the possibility of new treatment options for patients diagnosed with this lethal disease.”

    Deb plans to expand his strategy to larger studies in preclinical models of difficult-to-treat lung cancers and collaborate with clinicians to make a push for the clinical translation. 

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    About the Study

    Journal: Scientific Reports

    The study is titled: “Design of combination therapy for engineered bacterial therapeutics in non-small cell lung cancer.”

    Authors are: Dhruba Deb 1, Yangfan Wu 1, Courtney Coker 1, Tetsuhiro Harimoto 1, Ruoqi Huang 1 & Tal Danino 1,2,3

    1 Department of Biomedical Engineering, Columbia Engineering
    2 Herbert Irving Comprehensive Cancer Center, Columbia University
    3 Data Science Institute, Columbia University

    The study was funded by the Pershing Square Foundation (PSF) PSSCRA CU20-0730 (T.D.), Cancer Research Institute (CRI) CRI 3446 (T.D.) and NIH-NIBIB RO1 EB029750 (T.D.). 

    The authors declare no financial or other conflicts of interest.

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    LINKS:

    Paper: https://www.nature.com/articles/s41598-022-26105-1   

    DOI: 10.1038/ s41598- 022- 26105-1  

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    Columbia University School of Engineering and Applied Science

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  • Model analysis of atmospheric observations reveals methane leakage in North China

    Model analysis of atmospheric observations reveals methane leakage in North China

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    1. Background

    Natural gas is a relatively clean burning fossil fuel, that causes less air pollution than coal and is widely used in the world. Recent studies have shown that the natural gas leaks from production, supply chain, and end-use facilities are a large source of atmospheric methane (CH4), and the leaking budget is underestimated in many places by bottom-up inventories. CH4 is the second most important greenhouse gas (GHG) contributing to global warming after carbon dioxide (CO2), with a relatively shorter lifetime, making the reduction of CH4 emission a suitable target for implementing rapid and achievable mitigation strategies of the Paris Agreement.

    Over the last decade, natural gas has become the fastest-growing fossil energy source in China due to the coal-to-gas government initiative that has been implemented to reduce air pollution and CO2 emissions. Natural gas consumption has increased dramatically from 108.5 billion standard cubic meters (bcm) (4% of primary energy consumption) in 2010 to a record level of 280 bcm (7.6% of primary energy consumption) in 2018. In addition, according to China’s energy plan, the share of primary energy from gas will keep increasing and is likely to reach 15% by 2030, while coal and oil consumption will decline. From 2010 to 2018, the length of gas supply pipelines in urban areas of China increased approximately three-fold from 298 to 842 thousand kilometers. However, CH4 leakage from those pipelines has not been actively reported, and there is limited publicly available data on upstream emissions and local distribution of natural gas emissions in China.

    2. Research Outline and Results

    In this study, we used nine years (2010–2018) of CH4 observations by the Greenhouse gases Observing SATellite “IBUKI” (GOSAT) and surface station data from the World Data Centre for Greenhouse Gases (WDCGG) to estimate CH4 emissions in different regions of China. GOSAT observes the column-averaged dry-air mole fractions of CH4 in the atmosphere, and the surface stations monitor CH4 concentrations near surface. The observation data were used for simulations by the high-resolution inverse model NTFVAR (NIES-TM-FLEXPART-variational) to infer the surface flux of CH4 emissions. Inverse modelling optimizes prior flux estimates, which are constrained so that an acceptable agreement between the simulated and observed atmospheric concentrations is achieved.

    Figure 1 shows the model-estimated CH4 fluxes in four regions of China. The four regions, North China (NE), South China (SE), North-west China (NW), and the Qinghai-Tibetan Plateau (TP), vary with respect climate, geographical features, types of agriculture, major economic activities, and CH4 emission sources. The model-estimated average CH4 emissions from the four subregions over the period 2010–2018 are 30.0±1.0 (average ± standard deviation) Tg CH4 yr-1 from the SE region, 23.3±2.7 Tg CH4 yr-1 from the NE region, 2.9±0.2 Tg CH4 yr-1 from the NW region, and 1.7±0.1 Tg CH4 yr-1 from the TP region. The trends in CH4 emissions have varied in the different regions of China over the last nine years, with significant increase trends detected in the NE region and the whole China.

    We focused our analysis on the NE region where natural gas production and consumption have increased dramatically and are likely one of the main contributors to the increase estimated in regional total CH4 emissions. The CH4 emissions from natural gas, including leakage from fuel extraction, processing, transport, and the end-use stage, were estimated using an approach that combined data for the province-level emissions inventory and published inverse model studies. The model-estimated total CH4 emissions and the estimated natural gas emissions both increased significantly during 2010–2018 (Figure 2). The total amount of natural gas emissions due to leakages constitutes a significant waste of energy and value. For example, in 2018, natural gas consumption in the NE region was 101.5 bcm and the estimated total natural gas emissions were 3.2%–5.3% of regional consumption.

    Figure 3 shows the changes in estimated CH4 emissions from natural gas and the model-estimated total CH4 emissions for 2010-2018 compared to previous years in the NE region. The year-over-year change in the model-estimated total CH4 emission closely follows the changes in CH4 emissions from natural gas. In January 2016, record cold wave hit the region causing a sudden increase in natural gas use, and natural gas suppliers recorded an increase in natural gas loss (i.e., the difference between the amount of gas purchased and the amount of gas sold). Simultaneously, the atmospheric observations also captured the emission changes, as reflected in our inverse estimates (Figure 3). The analysis shows a strong correlation between trends in natural gas use and the increase in the atmospheric CHconcentration over the NE region, which is indicative the ability of GOSAT to monitor variations in regional anthropogenic sources.

    3. Future Perspectives

    The findings of our study highlight that the increase in natural gas use threatens China’s carbon reduction efforts. The increase in CH4 leaks from natural gas production and the supply chain will adversely affect the interests of diverse stakeholders, despite the introduction of carbon reduction measures. Given that the large natural gas distribution pipelines span more than 900 thousand kilometers in China, natural gas leaks constitute a significant waste of energy and value. The year-over-year changes in regional emissions and trends were detected by satellite and surface observations in this study. In the future, additional observations using high-resolution satellites will help to more accurately quantify emissions and provide scientific directions for emission reduction measures. There is also a need to further detect and locate such leaks using advanced mobile platforms in order to effectively mitigate CH4 emissions in China and bring about economic, environmental, and health benefits.

    4. Data Availability

    GOSAT data used in this study are available from the GOSAT Data Archive Service https://data2.gosat.nies.go.jp/index_en.html

    In-situ methane observation data are archived on the WDCGG Global Network: https://gaw.kishou.go.jp/

    Emissions Database for Global Atmospheric Research (EDGAR) emission inventories are available for download at

    https://edgar.jrc.ec.europa.eu/

    Global Fire Assimilation System (GFAS) fire emissions Database are from https://www.ecmwf.int/en/forecasts/dataset/global-fire-assimilation-system

    Wetland emission by Vegetation Integrative SImulator for Trace gases (VISIT) model are available at

    https://www.nies.go.jp/doi/10.17595/20210521.001-e.html

    The NIES airborne and Japan-Russia Siberian Tall Tower Inland Observation network (JR STATION) data are available at

    https://db.cger.nies.go.jp/ged/en/index.html

    The Japanese 55-year Reanalysis (JRA-55) data from the Japanese Meteorological Agency (JMA) are available at

    https://search.diasjp.net/en/dataset/JRA55

    5. Supplementary Information

    ○ Greenhouse gases Observing SATellite “IBUKI” (GOSAT)

    The Greenhouse Gases Observing Satellite “IBUKI” (GOSAT) is the world’s first spacecraft to monitor the concentrations of the two major GHGs CO2 and CH4 from space. NIES has promoted the GOSAT series projects for GHG observation from space, together with the Ministry of the Environment, Japan (MOE) and the Japan Aerospace Exploration Agency (JAXA). GOSAT (IBUKI) is the first satellite in the series and has been observing column-averaged concentrations of CO2 and CH4 for more than 13 years since its launch in 2009. The second satellite, GOSAT-2 (IBUKI-2) was launched in 2018 and started observing carbon monoxide in addition to CO2 and CH4. Furthermore, the third satellite, Global Observing SATellite for Greenhouse gases and Water cycle (GOSAT-GW) is under development and due for launch in Japanese fiscal year 2023.

    ○ Lifetime of methane in the atmosphere

    Methane is the second most important well-mixed GHG contributing to human-induced climate change after CO2. The lifetime of CH4 in the atmosphere refers to the time that CH4 stays in the air after being emitted from a variety of sources. CH4 is removed from the atmosphere mostly by chemical reactions. The atmospheric lifetime of CH4 is 10 ± 2 years, which is relatively shorter than that of CO2 (approximately 5 to 200 years) (IPCC, 2013).

    ○ Methane emission sources

    Methane is emitted from a variety of anthropogenic and natural sources. Approximately 60% of all CH4 emissions come from anthropogenic sources, such as agricultural activities, waste treatment, oil and natural gas systems, coal mining, stationary and mobile combustion, and certain industrial processes. Natural emissions include wetlands, freshwater bodies such as lakes and rivers, and geological sources such as terrestrial and marine seeps and volcanoes. Other smaller sources include ruminant wild animals, termites, hydrates and permafrost.

    ○ Underestimation of methane emissions from oil and gas using bottom-up inventories

    Methane can leak into the atmosphere from upstream/downstream natural gas operations (i.e., extraction and gathering, processing, transmission and storage, and distribution) and end-use combustion. Atmospheric measurement studies have shown that a large amount of CH4 emissions from oil and gas production are unaccounted for in bottom-up inventories. Using high-resolution satellite observations, Zhang et al. (2020) estimated a leakage equivalent to 3.7% (~60% higher than the national average leakage rate) of all the gas extracted from the largest oil-producing basin in the United States. Chan et al. (2020) reported eight-year estimates of CH4 emissions from oil and gas operations in western Canada and found that they were nearly twice that from inventories. Weller et al. (2020) used an advanced mobile leak detection (AMLD) platform combined with GIS information of utility pipelines to estimate CH4 leakage from pipelines of local distribution systems in the United States. They found that the leakage from those pipelines was approximately five times greater than that reported in inventories compiled based on self-reported utility leakage data.

    ○ High-resolution inverse model NIES-TM-FLEXPART-variational (NTFVAR)

    Inverse modeling is an important and essential method for estimating GHGs emissions. The model uses atmospheric observation data as a controller in atmospheric models to optimize bottom-up emission inventories (prior fluxes).

    The NIES-TM-FLEXPART-variational (NTFVAR) global inverse model was developed by Dr.Shamil Maksyutov’s group at NIES. NTFVAR is combined with a joint Eulerian three-dimensional transport model, the National Institute for Environmental Studies Transport Model (NIES-TM) v08.1i, and a Lagrangian model, the FLEXPART model v.8.0. The transport model is driven by JRA-55 meteorological data from JMA. The prior fluxes include gridded anthropogenic emissions from the EDGAR database, such as energy, agriculture, waste and other sectors; wetland emissions estimated by the Wetland emission by the VISIT model; biomass burning emissions estimated by GFAS; and climatological emissions from oceanic, geological, and termite sources. The inverse modeling problem is formulated and solved to find the optimal value of corrections to prior fluxes minimizing mismatches between observations and modelled concentrations. Variational optimization is applied to obtain flux corrections to vary prior uncertainty fields at a resolution of 0.1° × 0.1° with bi-weekly time steps. A variational inversion scheme is combined with the high-resolution variant of the transport model and its adjoint described by Maksyutov et al. (2021).

    References:

    Chan, E. et al. Eight-Year Estimates of Methane Emissions from Oil and Gas Operations in Western Canada Are Nearly Twice Those Reported in Inventories. Environmental Science & Technology 54, 14899-14909, doi:10.1021/acs.est.0c04117 (2020).

    IPCC 2013: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change. [Stocker, T. F. Q. et al.]. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA.

    Maksyutov, S. et al. Technical note: A high-resolution inverse modelling technique for estimating surface CO2 fluxes based on the NIES-TM – FLEXPART coupled transport model and its adjoint. Atmospheric Chemistry Physics 21, 1245–1266 doi:10.5194/acp-21-1245-2021(2021).

    Weller, Z., Hamburg, S. & von Fischer, J. A National Estimate of Methane Leakage from Pipeline Mains in Natural Gas Local Distribution Systems. Environmental Science & Technology 54, 8958-8967, doi:10.1021/acs.est.0c00437 (2020).

    Zhang, Y. et al. Quantifying methane emissions from the largest oil-producing basin in the United States from space. Science Advances 6, doi:10.1126/sciadv.aaz5120 (2020).

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    National Institute for Environmental Studies

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